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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0012034 through 18771 annotations produced 1 hits



Acetyl CoA synthetase (AcCoAS):

Annotation Number : CG9390
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0012034
Gbrowse : chr3L:21264307-21273343 (-) // 100.0 //
Probeset : 1641148_a_at
Accessions : protein= NP_001014599; /// NP_524196; /// NP_730611;, nucleotide= NM_001014599; /// NM_079472; /// NM_168894;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0012034.
TRiP has 1 RNAi stocks for FBgn0012034 available for purchase.
VDRC has 1 RNAi stocks for FBgn0012034 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain845 144 of 4 0.80Down
Head2067 1214 of 4 2.00Up
Eye1000 1574 of 4 0.96None
Thoracicoabdominal ganglion733 164 of 4 0.70Down
Salivary gland104 104 of 4 0.10Down
Crop3784 1334 of 4 3.60Up
Midgut1344 334 of 4 1.30Up
Tubule2702 1074 of 4 2.60Up
Hindgut1713 124 of 4 1.60Up
Heart2973 514 of 4 2.86Up
Fat body4226 4154 of 4 4.06Up
Ovary303 54 of 4 0.30Down
Testis22 14 of 4 0.00Down
Male accessory glands167 164 of 4 0.20Down
Virgin spermatheca4687 1454 of 4 4.50Up
Mated spermatheca4141 1184 of 4 3.98Up
Adult carcass3224 534 of 4 3.10Up
Larval CNS285 274 of 4 0.27Down
Larval Salivary gland73 114 of 4 0.07Down
Larval midgut1159 1444 of 4 1.11None
Larval tubule402 124 of 4 0.40Down
Larval hindgut900 784 of 4 0.87None
Larval fat body1867 1574 of 4 1.80Up
Larval trachea162 654 of 4 0.16Down
Larval carcass281 304 of 4 0.27Down
S2 cells (growing)746 174 of 4 0.72Down
Whole fly1040 674 of 4

Looking for FBgn0012034. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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