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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0012036 through 18771 annotations produced 1 hits



Acetaldehyde dehydrogenase (Aldh):

Annotation Number : CG3752
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0012036
Gbrowse : chr2L:9387388-9391679 (+) // 100.0 //
Probeset : 1634096_at
Accessions : protein= NP_609285;, nucleotide= NM_135441;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 000573
Interpro : 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from direct assay /// 0004029 // aldehyde dehydrogenase (NA
FlyMine data for FBgn0012036.
Homophila reports that CG3752 is a close match (2e-25) to human gene ALDH4;ALDH4A1;P5CDH (NP_733844), a gene associated with Hyperprolinemia, type II, 239510 (3).
BioGrid reports that CG3752 interacts with CG7338 .
TRiP has 1 RNAi stocks for FBgn0012036 available for purchase.
VDRC has 1 RNAi stocks for FBgn0012036 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain726 394 of 4 0.50Down
Head2787 1024 of 4 2.00Up
Eye1477 144 of 4 1.05None
Thoracicoabdominal ganglion905 164 of 4 0.60Down
Salivary gland2127 764 of 4 1.51Up
Crop2778 914 of 4 2.00Up
Midgut1393 274 of 4 1.00None
Tubule2323 2494 of 4 1.60Up
Hindgut1344 614 of 4 1.00None
Heart2645 1004 of 4 1.87Up
Fat body3704 4524 of 4 2.62Up
Ovary920 384 of 4 0.70Down
Testis1464 544 of 4 1.00None
Male accessory glands858 454 of 4 0.60Down
Virgin spermatheca3996 1504 of 4 2.83Up
Mated spermatheca3829 1694 of 4 2.71Up
Adult carcass3133 1154 of 4 2.20Up
Larval CNS740 924 of 4 0.52Down
Larval Salivary gland1432 334 of 4 1.01None
Larval midgut2034 2504 of 4 1.44None
Larval tubule735 334 of 4 0.50Down
Larval hindgut892 1074 of 4 0.63Down
Larval fat body835 1024 of 4 0.60Down
Larval trachea1151 1034 of 4 0.82Down
Larval carcass612 764 of 4 0.43Down
S2 cells (growing)1227 274 of 4 0.87None
Whole fly1411 824 of 4

Looking for FBgn0012036. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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