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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0012058 through 18771 annotations produced 1 hits



makos (Cdc27):

Annotation Number : CG8610
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0012058
Gbrowse : chr3L:7238855-7242439 (-) // 100.0 //
Probeset : 1631430_at
Accessions : protein= NP_648093;, nucleotide= NM_139836;
Pathway : via spliceosome // inferred by curator /// 0007049 // cell cycle // inferred from mutant phenotype /// 0007067 // mitos
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay
FlyMine data for FBgn0012058.
BDGP gene expression has embryonic in situ data for Cdc27: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0012058 available for purchase.
VDRC has 2 RNAi stocks for FBgn0012058 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain113 44 of 4 1.70Up
Head40 34 of 4 0.60Down
Eye85 54 of 4 1.25None
Thoracicoabdominal ganglion97 44 of 4 1.40Up
Salivary gland52 73 of 4 0.77None
Crop66 44 of 4 1.00None
Midgut34 24 of 4 0.50Down
Tubule32 14 of 4 0.50Down
Hindgut58 64 of 4 0.90None
Heart56 24 of 4 0.83None
Fat body45 24 of 4 0.66None
Ovary129 44 of 4 1.90Up
Testis173 154 of 4 2.50Up
Male accessory glands39 24 of 4 0.60Down
Virgin spermatheca28 14 of 4 0.42Down
Mated spermatheca39 54 of 4 0.57Down
Adult carcass46 44 of 4 0.70None
Larval CNS138 24 of 4 2.03Up
Larval Salivary gland70 44 of 4 1.03None
Larval midgut26 22 of 4 0.39Down
Larval tubule70 24 of 4 1.00None
Larval hindgut53 34 of 4 0.78None
Larval fat body68 84 of 4 1.00None
Larval trachea80 54 of 4 1.18None
Larval carcass39 04 of 4 0.57Down
S2 cells (growing)94 44 of 4 1.38None
Whole fly68 94 of 4

Looking for FBgn0012058. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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