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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0012344 through 18771 annotations produced 2 hits



CRF-like peptide /// p16-ARC (Dh /// p16-ARC):

Annotation Number : CG9881
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031437
Gbrowse : chr2L:2580290-2581114 (+) // 100.0 //
Probeset : 1634204_at
Accessions : protein= NP_608693;, nucleotide= NM_134849;
Pathway : engulfment // inferred from mutant phenotype /// 0007218 // neuropeptide signaling pathway // inferred from sequence si
Interpro : 0005576 // extracellular region // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from elec
FlyMine data for FBgn0031437.
BDGP gene expression has embryonic in situ data for p16-ARC: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0031437 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031437 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain162 14 of 4 0.80Down
Head152 24 of 4 0.70Down
Eye210 64 of 4 1.01None
Thoracicoabdominal ganglion146 24 of 4 0.70Down
Salivary gland255 224 of 4 1.23None
Crop275 24 of 4 1.30Up
Midgut409 54 of 4 2.00Up
Tubule453 124 of 4 2.20Up
Hindgut254 64 of 4 1.20Up
Heart205 34 of 4 0.98None
Fat body89 104 of 4 0.43Down
Ovary271 44 of 4 1.30Up
Testis274 74 of 4 1.30Up
Male accessory glands308 164 of 4 1.50Up
Virgin spermatheca173 114 of 4 0.83None
Mated spermatheca187 124 of 4 0.90None
Adult carcass124 34 of 4 0.60Down
Larval CNS276 124 of 4 1.33Up
Larval Salivary gland479 114 of 4 2.30Up
Larval midgut492 184 of 4 2.36Up
Larval tubule537 154 of 4 2.60Up
Larval hindgut366 124 of 4 1.76Up
Larval fat body271 94 of 4 1.30Up
Larval trachea457 134 of 4 2.19Up
Larval carcass245 94 of 4 1.18Up
S2 cells (growing)479 104 of 4 2.30Up
Whole fly208 94 of 4



CRF-like peptide (Dh):

Annotation Number : CG8348
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0012344
Gbrowse : chr3R:5463903-5475982 (+) // 100.0 //
Probeset : 1634957_at
Accessions : protein= NP_001097725; /// NP_649922;, nucleotide= NM_001104255; /// NM_141665;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005179 // hormone activity // inferred from electronic annotation /// 0005184 // neuropeptide hormone activity // infer
FlyMine data for FBgn0012344.
TRiP has 1 RNAi stocks for FBgn0012344 available for purchase.
VDRC has 2 RNAi stocks for FBgn0012344 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain654 234 of 431.30Up
Head174 104 of 4 8.30Up
Eye7 22 of 4 0.36Down
Thoracicoabdominal ganglion124 44 of 4 5.90Up
Salivary gland12 40 of 4 0.59None
Crop5 10 of 4 0.30Down
Midgut8 30 of 4 0.40Down
Tubule15 81 of 4 0.70None
Hindgut4 10 of 4 0.20Down
Heart0 00 of 4 0.04Down
Fat body9 30 of 4 0.44Down
Ovary1 00 of 4 0.10Down
Testis77 44 of 4 3.70Up
Male accessory glands6 10 of 4 0.30Down
Virgin spermatheca6 10 of 4 0.32Down
Mated spermatheca9 23 of 4 0.47Down
Adult carcass4 10 of 4 0.20Down
Larval CNS231 444 of 411.05Up
Larval Salivary gland3 10 of 4 0.16Down
Larval midgut17 11 of 4 0.85None
Larval tubule64 104 of 4 3.10Up
Larval hindgut14 14 of 4 0.69Down
Larval fat body15 61 of 4 0.70None
Larval trachea2 20 of 4 0.13Down
Larval carcass7 10 of 4 0.34Down
S2 cells (growing)3 10 of 4 0.17Down
Whole fly20 14 of 4

Looking for FBgn0012344. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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