FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0013263 through 18771 annotations produced 4 hits

/// GAGA factor (CG33260 /// Trl):

Annotation Number : CG13470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013263 /// FBgn0053260
Gbrowse : chr3L:14753678-14754821 (-) // 100.0 //
Probeset : 1633713_at
Accessions : protein= NP_001036605;, nucleotide= NM_001043140;
Pathway : via endonucleolytic cleavage and ligation // inferred from electronic annotation /// 0007049 // cell cycle // inferred
Interpro : DNA-dependent // inferred from direct assay /// 0045893 // positive regulation of transcription
FlyMine data for FBgn0013263 /// FBgn0053260.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.30	None
Head	1 ± 0	0 of 4	0.40	None
Eye	2 ± 1	0 of 4	0.53	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.60	None
Salivary gland	125 ± 10	0 of 4	23.73	Up
Crop	7 ± 2	0 of 4	1.40	None
Midgut	3 ± 0	0 of 4	0.60	None
Tubule	5 ± 1	0 of 4	1.00	None
Hindgut	3 ± 2	0 of 4	0.70	None
Heart	5 ± 1	0 of 4	1.05	None
Fat body	5 ± 4	0 of 4	1.00	None
Ovary	4 ± 2	0 of 4	0.90	None
Testis	57 ± 1	4 of 4	10.80	Up
Male accessory glands	2 ± 0	0 of 4	0.50	None
Virgin spermatheca	10 ± 1	0 of 4	1.94	None
Mated spermatheca	8 ± 2	0 of 4	1.63	None
Adult carcass	2 ± 0	0 of 4	0.40	None
Larval CNS	3 ± 1	0 of 4	0.61	None
Larval Salivary gland	24 ± 1	0 of 4	4.59	Up
Larval midgut	9 ± 2	0 of 4	1.74	None
Larval tubule	28 ± 5	0 of 4	5.40	Up
Larval hindgut	3 ± 1	0 of 4	0.56	None
Larval fat body	48 ± 5	0 of 4	9.20	Up
Larval trachea	12 ± 2	0 of 4	2.33	Up
Larval carcass	2 ± 0	0 of 4	0.42	None
S2 cells (growing)	16 ± 2	0 of 4	3.08	Up
Whole fly	5 ± 1	0 of 4

GAGA factor (Trl):

Annotation Number : CG9343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013263
Gbrowse : chr3L:14743341-14750982 (-) // 100.0 //
Probeset : 1635305_s_at
Accessions : protein= NP_001034013; /// NP_001034014; /// NP_001034015; /// NP_996077; /// NP_996078; /// NP_996079; /// NP_996080; /// NP_996081; /// NP_996082;, nucleotide= NM_001038924; /// NM_001038925; /// NM_001038926; /// NM_206355; /// NM_206356; /// NM_206357; /// NM_206358; /// NM_206359; /// NM_206360;
Pathway : via endonucleolytic cleavage and ligation // inferred from electronic annotation /// 0007049 // cell cycle // inferred
Interpro : DNA-dependent // traceable author statement /// 0045893 // positive regulation of transcription
FlyMine data for FBgn0013263.
BDGP gene expression has embryonic in situ data for Trl: 18 pix of staining in 20 body parts.
TRiP has 2 RNAi stocks for FBgn0013263 available for purchase.
VDRC has 3 RNAi stocks for FBgn0013263 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	83 ± 4	4 of 4	0.80	Down
Head	159 ± 4	4 of 4	1.50	Up
Eye	95 ± 7	4 of 4	0.88	None
Thoracicoabdominal ganglion	78 ± 5	4 of 4	0.70	Down
Salivary gland	820 ± 38	4 of 4	7.59	Up
Crop	317 ± 24	4 of 4	2.90	Up
Midgut	144 ± 1	4 of 4	1.30	Up
Tubule	251 ± 12	4 of 4	2.30	Up
Hindgut	217 ± 12	4 of 4	2.00	Up
Heart	102 ± 3	4 of 4	0.95	None
Fat body	192 ± 14	4 of 4	1.78	Up
Ovary	136 ± 2	4 of 4	1.30	Up
Testis	21 ± 2	4 of 4	0.20	Down
Male accessory glands	225 ± 10	4 of 4	2.10	Up
Virgin spermatheca	200 ± 24	4 of 4	1.86	Up
Mated spermatheca	288 ± 10	4 of 4	2.67	Up
Adult carcass	202 ± 9	4 of 4	1.90	Up
Larval CNS	91 ± 6	4 of 4	0.85	Down
Larval Salivary gland	444 ± 12	4 of 4	4.11	Up
Larval midgut	114 ± 8	4 of 4	1.06	None
Larval tubule	98 ± 5	4 of 4	0.90	None
Larval hindgut	181 ± 14	4 of 4	1.68	Up
Larval fat body	86 ± 6	4 of 4	0.80	Down
Larval trachea	143 ± 25	4 of 4	1.33	None
Larval carcass	176 ± 12	4 of 4	1.63	Up
S2 cells (growing)	275 ± 4	4 of 4	2.55	Up
Whole fly	108 ± 4	4 of 4

/// GAGA factor (CG42507 /// Trl):

Annotation Number : CG9343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013263 /// FBgn0260233
Gbrowse : chr3L:14745933-14751041 (-) // 99.54 //
Probeset : 1629754_s_at
Accessions : protein= NP_001034013; /// NP_001034014; /// NP_001034015; /// NP_001163443; /// NP_001163444; /// NP_996077; /// NP_996078; /// NP_996079; /// NP_996080; /// NP_996081; /// NP_996082;, nucleotide= NM_001038924; /// NM_001038925; /// NM_001038926; /// NM_001169972; /// NM_001169973; /// NM_206355; /// NM_206356; /// NM_206357; /// NM_206358; /// NM_206359; /// NM_206360;
Pathway : via endonucleolytic cleavage and ligation // inferred from electronic annotation /// 0007049 // cell cycle // inferred
Interpro : DNA-dependent // traceable author statement /// 0045893 // positive regulation of transcription
FlyMine data for FBgn0013263 /// FBgn0260233.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	103 ± 7	4 of 4	0.90	None
Head	31 ± 5	4 of 4	0.30	Down
Eye	117 ± 4	4 of 4	0.99	None
Thoracicoabdominal ganglion	61 ± 4	4 of 4	0.50	Down
Salivary gland	143 ± 21	4 of 4	1.22	None
Crop	71 ± 5	4 of 4	0.60	None
Midgut	37 ± 3	4 of 4	0.30	Down
Tubule	87 ± 1	4 of 4	0.70	Down
Hindgut	41 ± 1	4 of 4	0.40	Down
Heart	53 ± 2	4 of 4	0.45	Down
Fat body	43 ± 8	4 of 4	0.37	Down
Ovary	336 ± 6	4 of 4	2.90	Up
Testis	86 ± 3	4 of 4	0.70	None
Male accessory glands	36 ± 4	3 of 4	0.30	Down
Virgin spermatheca	47 ± 3	4 of 4	0.41	Down
Mated spermatheca	64 ± 6	4 of 4	0.54	Down
Adult carcass	31 ± 6	3 of 4	0.30	Down
Larval CNS	320 ± 42	4 of 4	2.72	Up
Larval Salivary gland	211 ± 18	4 of 4	1.80	Up
Larval midgut	48 ± 4	4 of 4	0.41	Down
Larval tubule	44 ± 0	4 of 4	0.40	Down
Larval hindgut	63 ± 3	4 of 4	0.54	Down
Larval fat body	88 ± 5	4 of 4	0.80	None
Larval trachea	324 ± 10	4 of 4	2.75	Up
Larval carcass	122 ± 6	4 of 4	1.04	None
S2 cells (growing)	291 ± 7	4 of 4	2.47	Up
Whole fly	117 ± 16	4 of 4

/// GAGA factor (CG42507 /// Trl):

Annotation Number : CG9343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013263 /// FBgn0260233
Gbrowse : chr3L:14741028-14750430 (-) // 100.0 //
Probeset : 1628275_at
Accessions : protein= NP_001034013; /// NP_001034014; /// NP_001034015; /// NP_001163443; /// NP_001163444; /// NP_996077; /// NP_996078; /// NP_996079; /// NP_996080; /// NP_996081; /// NP_996082;, nucleotide= NM_001038924; /// NM_001038925; /// NM_001038926; /// NM_001169972; /// NM_001169973; /// NM_206355; /// NM_206356; /// NM_206357; /// NM_206358; /// NM_206359; /// NM_206360;
Pathway : via endonucleolytic cleavage and ligation // inferred from electronic annotation /// 0007049 // cell cycle // inferred
Interpro : DNA-dependent // traceable author statement /// 0045893 // positive regulation of transcription
FlyMine data for FBgn0013263 /// FBgn0260233.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	737 ± 8	4 of 4	20.50	Up
Head	158 ± 15	4 of 4	4.40	Up
Eye	118 ± 13	4 of 4	3.29	Up
Thoracicoabdominal ganglion	487 ± 28	4 of 4	13.60	Up
Salivary gland	23 ± 2	2 of 4	0.64	Down
Crop	12 ± 1	4 of 4	0.40	Down
Midgut	20 ± 1	4 of 4	0.60	Down
Tubule	33 ± 5	4 of 4	0.90	None
Hindgut	13 ± 0	4 of 4	0.40	Down
Heart	4 ± 1	0 of 4	0.14	Down
Fat body	9 ± 1	2 of 4	0.26	Down
Ovary	23 ± 0	4 of 4	0.60	Down
Testis	5 ± 1	2 of 4	0.20	Down
Male accessory glands	12 ± 1	2 of 4	0.30	Down
Virgin spermatheca	8 ± 1	1 of 4	0.23	Down
Mated spermatheca	8 ± 1	1 of 4	0.22	Down
Adult carcass	16 ± 1	3 of 4	0.50	Down
Larval CNS	930 ± 195	4 of 4	25.93	Up
Larval Salivary gland	24 ± 3	4 of 4	0.67	Down
Larval midgut	5 ± 0	1 of 4	0.16	Down
Larval tubule	4 ± 1	1 of 4	0.10	Down
Larval hindgut	8 ± 0	2 of 4	0.25	Down
Larval fat body	19 ± 1	4 of 4	0.50	Down
Larval trachea	16 ± 6	4 of 4	0.45	Down
Larval carcass	36 ± 5	4 of 4	1.03	None
S2 cells (growing)	17 ± 1	4 of 4	0.50	Down
Whole fly	35 ± 3	4 of 4

Looking for FBgn0013263. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720