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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013269 through 18771 annotations produced 1 hits



FK506-binding protein 1 (FK506-bp1):

Annotation Number : CG6226
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013269
Gbrowse : chr3R:11157305-11158864 (-) // 100.0 //
Probeset : 1629598_at
Accessions : protein= NP_524364;, nucleotide= NM_079640;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
Interpro : 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence or structural similarity /// 0003755 /
FlyMine data for FBgn0013269.
BDGP gene expression has embryonic in situ data for FK506-bp1: 20 pix of staining in 29 body parts.
Homophila reports that CG6226 is a close match (3e-16) to human gene FKBP5;FKBP51 (NP_004108), a gene associated with {Major depressive disorder and accelerated response to antidepressant drug treatment}, 608516 (3).
TRiP has 1 RNAi stocks for FBgn0013269 available for purchase.
VDRC has 3 RNAi stocks for FBgn0013269 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain148 ± 54 of 4 0.20Down
Head163 ± 24 of 4 0.20Down
Eye120 ± 64 of 4 0.17Down
Thoracicoabdominal ganglion176 ± 104 of 4 0.20Down
Salivary gland214 ± 34 of 4 0.29Down
Crop200 ± 94 of 4 0.30Down
Midgut201 ± 84 of 4 0.30Down
Tubule190 ± 364 of 4 0.30Down
Hindgut163 ± 74 of 4 0.20Down
Heart123 ± 114 of 4 0.17Down
Fat body259 ± 324 of 4 0.36Down
Ovary1543 ± 24 of 4 2.10Up
Testis177 ± 14 of 4 0.20Down
Male accessory glands550 ± 394 of 4 0.80Down
Virgin spermatheca149 ± 44 of 4 0.21Down
Mated spermatheca190 ± 74 of 4 0.26Down
Adult carcass206 ± 164 of 4 0.30Down
Larval CNS1098 ± 334 of 4 1.51Up
Larval Salivary gland827 ± 294 of 4 1.13None
Larval midgut141 ± 94 of 4 0.19Down
Larval tubule137 ± 74 of 4 0.20Down
Larval hindgut259 ± 244 of 4 0.36Down
Larval fat body165 ± 144 of 4 0.20Down
Larval trachea679 ± 1324 of 4 0.93None
Larval carcass447 ± 824 of 4 0.61Down
S2 cells (growing)704 ± 274 of 4 0.97None
Whole fly729 ± 404 of 4

Looking for FBgn0013269. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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