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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013272 through 18771 annotations produced 1 hits



glycoprotein 150 (Gp150):

Annotation Number : CG5820
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013272
Gbrowse : chr2R:18205166-18216933 (+) // 100.0 //
Probeset : 1631569_s_at
Accessions : protein= NP_477049; /// NP_726190; /// NP_726191; /// NP_726192;, nucleotide= NM_057701; /// NM_166527; /// NM_166528; /// NM_166529;
Pathway : 0005886 // plasma membrane // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0013272.
BDGP gene expression has embryonic in situ data for Gp150: 23 pix of staining in 7 body parts.
Homophila reports that CG5820 is a close match (4e-11) to human gene NOGOR;RTN4R (NP_075380), a gene associated with {Schizophrenia, susceptibility to}, 181500 (3).
BioGrid reports that CG5820 interacts with CG7057 CG3619 CG3936 CG3936 .
TRiP has 1 RNAi stocks for FBgn0013272 available for purchase.
VDRC has 5 RNAi stocks for FBgn0013272 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain241 ± 84 of 4 0.20Down
Head1755 ± 534 of 4 1.40Up
Eye2352 ± 924 of 4 1.83Up
Thoracicoabdominal ganglion242 ± 24 of 4 0.20Down
Salivary gland4531 ± 1404 of 4 3.52Up
Crop3956 ± 1504 of 4 3.10Up
Midgut3002 ± 294 of 4 2.30Up
Tubule4285 ± 1304 of 4 3.30Up
Hindgut4162 ± 754 of 4 3.20Up
Heart3411 ± 834 of 4 2.65Up
Fat body2899 ± 2704 of 4 2.25Up
Ovary446 ± 294 of 4 0.30Down
Testis378 ± 164 of 4 0.30Down
Male accessory glands230 ± 184 of 4 0.20Down
Virgin spermatheca4151 ± 744 of 4 3.23Up
Mated spermatheca3208 ± 1544 of 4 2.49Up
Adult carcass2113 ± 844 of 4 1.60Up
Larval CNS664 ± 534 of 4 0.52Down
Larval Salivary gland2625 ± 1184 of 4 2.04Up
Larval midgut3168 ± 654 of 4 2.46Up
Larval tubule4376 ± 874 of 4 3.40Up
Larval hindgut3999 ± 414 of 4 3.11Up
Larval fat body492 ± 464 of 4 0.40Down
Larval trachea3791 ± 1234 of 4 2.95Up
Larval carcass1811 ± 924 of 4 1.41Up
S2 cells (growing)2679 ± 704 of 4 2.08Up
Whole fly1286 ± 314 of 4

Looking for FBgn0013272. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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