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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013275 through 18771 annotations produced 1 hits



heat shock 70 /// heat shock 70 (Hsp70Aa /// Hsp70Ab):

Annotation Number : CG18743
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013275 /// FBgn0013276
Gbrowse : chr3R:7784274-7786673 (+) // 100.0 // /// chr3R:8328247-8330406 (+) // 86.49 // /// chr3R:7779881-7782246 (-) // 98.54 // /// chr3R:8291346-8293498 (-) // 86.16 //
Probeset : 1639571_s_at
Accessions : protein= NP_524798; /// NP_731651;, nucleotide= NM_080059; /// NM_169441;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0013275 /// FBgn0013276.
BioGrid reports that CG18743 interacts with CG32130 CG5203 CG7945 CG1968 CG31122 CG31163 CG31534 CG32491 CG32772 CG4730 CG4835 CG4853 CG5618 CG5645 CG5680 CG6608 CG7146 CG7570 CG8120 CG8286 CG8697 CG9331 CG9614 CG9986 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 24 of 4 1.70Up
Head20 ± 24 of 4 0.70None
Eye26 ± 83 of 4 0.90None
Thoracicoabdominal ganglion42 ± 44 of 4 1.40None
Salivary gland62 ± 34 of 4 2.13Up
Crop60 ± 74 of 4 2.00Up
Midgut23 ± 24 of 4 0.80None
Tubule2114 ± 5323 of 471.80Up
Hindgut17 ± 34 of 4 0.60None
Heart126 ± 604 of 4 4.28None
Fat body82 ± 434 of 4 2.82None
Ovary97 ± 124 of 4 3.30Up
Testis27 ± 34 of 4 0.90None
Male accessory glands11 ± 22 of 4 0.40Down
Virgin spermatheca10 ± 12 of 4 0.34Down
Mated spermatheca330 ± 1894 of 411.22None
Adult carcass16 ± 31 of 4 0.60None
Larval CNS74 ± 724 of 4 2.54None
Larval Salivary gland470 ± 1334 of 415.99Up
Larval midgut117 ± 654 of 4 3.97None
Larval tubule84 ± 484 of 4 2.90None
Larval hindgut264 ± 504 of 4 8.98Up
Larval fat body131 ± 464 of 4 4.50None
Larval trachea75 ± 474 of 4 2.55None
Larval carcass180 ± 464 of 4 6.13Up
S2 cells (growing)152 ± 134 of 4 5.18Up
Whole fly29 ± 44 of 4

Looking for FBgn0013275. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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