Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013277 through 18771 annotations produced 2 hits



heat shock 70 /// 87C locus /// Hsp70Bbb (Hsp70Ba /// Hsp70Bb /// Hsp70Bbb):

Annotation Number : CG31449
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013277 /// FBgn0013278 /// FBgn0051354
Gbrowse : chr3R:8331528-8334010 (+) // 99.76 // /// chr3R:8328245-8330727 (+) // 99.64 // /// chr3R:8334811-8337008 (+) // 87.96 // /// chr3R:7784272-7786446 (+) // 83.6 // /// chr3R:8291025-8293500 (-) // 100.0 // /// chr3R:7780075-7782249 (-) // 83.56 // /// chrUextra:2264505-2265391 (-) // 35.72 //
Probeset : 1629827_s_at
Accessions : protein= NP_524927; /// NP_731716; /// NP_788663;, nucleotide= NM_080188; /// NM_169469; /// NM_176486;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from d
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0013277 /// FBgn0013278 /// FBgn0051354.
BioGrid reports that CG31449 interacts with CG32130 CG5203 CG7945 CG1968 CG31122 CG31163 CG31534 CG32491 CG32772 CG4730 CG4835 CG4853 CG5618 CG5645 CG5680 CG6608 CG7146 CG7570 CG8120 CG8286 CG8697 CG9331 CG9614 CG9986 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 1.50None
Head2 ± 00 of 4 0.80None
Eye1 ± 00 of 4 0.52None
Thoracicoabdominal ganglion1 ± 00 of 4 0.50None
Salivary gland14 ± 10 of 4 6.31Up
Crop5 ± 01 of 4 2.40Up
Midgut2 ± 00 of 4 1.10None
Tubule4 ± 01 of 4 1.70Up
Hindgut3 ± 10 of 4 1.40None
Heart4 ± 11 of 4 1.94None
Fat body5 ± 21 of 4 2.31None
Ovary1 ± 00 of 4 0.70None
Testis3 ± 02 of 4 1.50None
Male accessory glands2 ± 10 of 4 1.00None
Virgin spermatheca2 ± 00 of 4 0.84None
Mated spermatheca3 ± 10 of 4 1.43None
Adult carcass1 ± 00 of 4 0.40None
Larval CNS3 ± 11 of 4 1.53None
Larval Salivary gland6 ± 11 of 4 2.90Up
Larval midgut4 ± 01 of 4 2.00Up
Larval tubule3 ± 00 of 4 1.60None
Larval hindgut3 ± 00 of 4 1.61None
Larval fat body6 ± 10 of 4 2.80None
Larval trachea2 ± 10 of 4 1.26None
Larval carcass5 ± 01 of 4 2.15None
S2 cells (growing)4 ± 00 of 4 1.95None
Whole fly2 ± 00 of 4



heat shock 70 /// 87C locus /// Hsp70Bbb /// heat shock 70 (Hsp70Ba /// Hsp70Bb /// Hsp70Bbb /// Hsp70Bc):

Annotation Number : CG6489
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013277 /// FBgn0013278 /// FBgn0013279 /// FBgn0051354
Gbrowse : chrUextra:698626-699463 (+) // 37.86 // /// chr3R:8334797-8337008 (+) // 100.0 // /// chr3R:8328231-8330448 (+) // 99.64 // /// chr3R:8331514-8333731 (+) // 99.59 // /// chr3R:7784258-7786445 (+) // 94.53 // /// chr3R:8291304-8293514 (-) // 99.05 // /// chr3R:7780076-7782263 (-) // 94.48 //
Probeset : 1626821_s_at
Accessions : protein= NP_524927; /// NP_650209; /// NP_731716; /// NP_788663;, nucleotide= NM_080188; /// NM_141952; /// NM_169469; /// NM_176486;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from d
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0013277 /// FBgn0013278 /// FBgn0013279 /// FBgn0051354.
BioGrid reports that CG6489 interacts with CG32130 CG5203 CG7945 CG1968 CG31122 CG31163 CG31534 CG32491 CG32772 CG4730 CG4835 CG4853 CG5618 CG5645 CG5680 CG6608 CG7146 CG7570 CG8120 CG8286 CG8697 CG9331 CG9614 CG9986 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 ± 24 of 4 3.20Up
Head22 ± 23 of 4 1.60Up
Eye14 ± 41 of 4 0.99None
Thoracicoabdominal ganglion43 ± 24 of 4 3.10Up
Salivary gland106 ± 104 of 4 7.49Up
Crop39 ± 74 of 4 2.80Up
Midgut18 ± 20 of 4 1.30None
Tubule1240 ± 3742 of 487.50Up
Hindgut12 ± 00 of 4 0.90None
Heart64 ± 264 of 4 4.57None
Fat body26 ± 103 of 4 1.88None
Ovary6 ± 10 of 4 0.40Down
Testis21 ± 24 of 4 1.50Up
Male accessory glands8 ± 30 of 4 0.60None
Virgin spermatheca6 ± 10 of 4 0.42Down
Mated spermatheca155 ± 823 of 410.97None
Adult carcass8 ± 00 of 4 0.60Down
Larval CNS67 ± 534 of 4 4.77None
Larval Salivary gland419 ± 1144 of 429.58Up
Larval midgut32 ± 151 of 4 2.29None
Larval tubule42 ± 224 of 4 3.00None
Larval hindgut169 ± 404 of 411.94Up
Larval fat body31 ± 113 of 4 2.30None
Larval trachea44 ± 494 of 4 3.17None
Larval carcass78 ± 194 of 4 5.56Up
S2 cells (growing)258 ± 254 of 418.20Up
Whole fly14 ± 12 of 4

Looking for FBgn0013277. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime