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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013300 through 18771 annotations produced 2 hits



protamine /// protamine (Mst35Ba /// Mst35Bb):

Annotation Number : CG4479
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013300 /// FBgn0013301
Gbrowse : chr2L:14879068-14881652 (-) // 100.0 // /// chr2L:14882128-14883749 (-) // 93.52 //
Probeset : 1633776_s_at
Accessions : protein= NP_477050; /// NP_477051;, nucleotide= NM_057702; /// NM_057703;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0013300 /// FBgn0013301.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland9 ± 40 of 4 0.01Down
Crop5 ± 10 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body11 ± 50 of 4 0.02Down
Ovary0 ± 00 of 4 0.00Down
Testis3195 ± 1754 of 4 4.70Up
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca6 ± 10 of 4 0.01Down
Mated spermatheca6 ± 20 of 4 0.01Down
Adult carcass26 ± 71 of 4 0.00Down
Larval CNS6 ± 40 of 4 0.01Down
Larval Salivary gland2 ± 00 of 4 0.00Down
Larval midgut5 ± 20 of 4 0.01Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.01Down
Larval fat body814 ± 4294 of 4 1.20None
Larval trachea27 ± 411 of 4 0.04Down
Larval carcass4 ± 20 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly678 ± 594 of 4



protamine (Mst35Ba):

Annotation Number : CG4479
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013300
Gbrowse : chr2L:14879068-14881652 (-) // 100.0 // /// chr2L:14882128-14883749 (-) // 93.52 //
Probeset : 1632367_at
Accessions : protein= NP_477050;, nucleotide= NM_057702;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0013300.
VDRC has 2 RNAi stocks for FBgn0013300 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 01 of 4 0.00Down
Head4 ± 21 of 4 0.00Down
Eye2 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland13 ± 21 of 4 0.06Down
Crop3 ± 00 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.01Down
Fat body6 ± 22 of 4 0.03Down
Ovary2 ± 00 of 4 0.00Down
Testis2015 ± 1614 of 4 8.80Up
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.01Down
Mated spermatheca3 ± 00 of 4 0.02Down
Adult carcass3 ± 10 of 4 0.00Down
Larval CNS5 ± 12 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut4 ± 10 of 4 0.02Down
Larval tubule5 ± 12 of 4 0.00Down
Larval hindgut3 ± 12 of 4 0.02Down
Larval fat body313 ± 1574 of 4 1.40None
Larval trachea10 ± 131 of 4 0.04Down
Larval carcass1 ± 10 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly227 ± 164 of 4

Looking for FBgn0013300. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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