FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0013301 through 18771 annotations produced 2 hits

protamine (Mst35Bb):

Annotation Number : CG4478
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013301
Gbrowse : chr2L:14882100-14883715 (-) // 100.0 //
Probeset : 1636404_at
Accessions : protein= NP_477051;, nucleotide= NM_057703;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0013301.
BDGP gene expression has embryonic in situ data for Mst35Bb: 4 pix of staining in 1 body parts.
VDRC has 5 RNAi stocks for FBgn0013301 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.00	Down
Head	2 ± 1	0 of 4	0.00	Down
Eye	1 ± 0	0 of 4	0.01	Down
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.00	Down
Salivary gland	10 ± 3	2 of 4	0.06	Down
Crop	4 ± 1	0 of 4	0.00	Down
Midgut	2 ± 1	0 of 4	0.00	Down
Tubule	4 ± 0	0 of 4	0.00	Down
Hindgut	2 ± 0	0 of 4	0.00	Down
Heart	1 ± 0	0 of 4	0.01	Down
Fat body	3 ± 3	0 of 4	0.02	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	1360 ± 54	4 of 4	8.70	Up
Male accessory glands	3 ± 1	0 of 4	0.00	Down
Virgin spermatheca	3 ± 0	0 of 4	0.02	Down
Mated spermatheca	4 ± 1	1 of 4	0.03	Down
Adult carcass	6 ± 2	0 of 4	0.00	Down
Larval CNS	1 ± 0	0 of 4	0.01	Down
Larval Salivary gland	2 ± 0	0 of 4	0.01	Down
Larval midgut	6 ± 1	0 of 4	0.04	Down
Larval tubule	3 ± 0	0 of 4	0.00	Down
Larval hindgut	4 ± 0	0 of 4	0.03	Down
Larval fat body	204 ± 114	4 of 4	1.30	None
Larval trachea	7 ± 12	1 of 4	0.05	Down
Larval carcass	3 ± 1	0 of 4	0.02	Down
S2 cells (growing)	1 ± 0	0 of 4	0.01	Down
Whole fly	157 ± 23	4 of 4

protamine /// protamine (Mst35Ba /// Mst35Bb):

Annotation Number : CG4479
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013300 /// FBgn0013301
Gbrowse : chr2L:14879068-14881652 (-) // 100.0 // /// chr2L:14882128-14883749 (-) // 93.52 //
Probeset : 1633776_s_at
Accessions : protein= NP_477050; /// NP_477051;, nucleotide= NM_057702; /// NM_057703;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0013300 /// FBgn0013301.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.00	Down
Head	4 ± 1	0 of 4	0.00	Down
Eye	0 ± 0	0 of 4	0.00	Down
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.00	Down
Salivary gland	9 ± 4	0 of 4	0.01	Down
Crop	5 ± 1	0 of 4	0.00	Down
Midgut	2 ± 0	0 of 4	0.00	Down
Tubule	2 ± 0	0 of 4	0.00	Down
Hindgut	2 ± 1	0 of 4	0.00	Down
Heart	1 ± 0	0 of 4	0.00	Down
Fat body	11 ± 5	0 of 4	0.02	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	3195 ± 175	4 of 4	4.70	Up
Male accessory glands	2 ± 1	0 of 4	0.00	Down
Virgin spermatheca	6 ± 1	0 of 4	0.01	Down
Mated spermatheca	6 ± 2	0 of 4	0.01	Down
Adult carcass	26 ± 7	1 of 4	0.00	Down
Larval CNS	6 ± 4	0 of 4	0.01	Down
Larval Salivary gland	2 ± 0	0 of 4	0.00	Down
Larval midgut	5 ± 2	0 of 4	0.01	Down
Larval tubule	3 ± 1	0 of 4	0.00	Down
Larval hindgut	3 ± 1	0 of 4	0.01	Down
Larval fat body	814 ± 429	4 of 4	1.20	None
Larval trachea	27 ± 41	1 of 4	0.04	Down
Larval carcass	4 ± 2	0 of 4	0.01	Down
S2 cells (growing)	1 ± 0	0 of 4	0.00	Down
Whole fly	678 ± 59	4 of 4

Looking for FBgn0013301. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720