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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013305 through 18771 annotations produced 1 hits



N-methyl-D-aspartate receptor-associated protein (Nmda1):

Annotation Number : CG3798
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013305
Gbrowse : chr2R:8764595-8767328 (-) // 100.0 //
Probeset : 1623376_s_at
Accessions : protein= NP_523722; /// NP_725237; /// NP_725238; /// NP_725239; /// NP_725240; /// NP_725241;, nucleotide= NM_078998; /// NM_165956; /// NM_165957; /// NM_165958; /// NM_165959; /// NM_165960;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004972 // N-methyl-D-aspartate selective glutam
FlyMine data for FBgn0013305.
BDGP gene expression has embryonic in situ data for Nmda1: 14 pix of staining in 7 body parts.
BioGrid reports that CG3798 interacts with CG8667 .
TRiP has 1 RNAi stocks for FBgn0013305 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013305 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1327 164 of 4 2.80Up
Head1587 704 of 4 3.30Up
Eye3231 494 of 4 6.75Up
Thoracicoabdominal ganglion1708 454 of 4 3.60Up
Salivary gland2948 2234 of 4 6.16Up
Crop1149 214 of 4 2.40Up
Midgut578 224 of 4 1.20None
Tubule2492 2014 of 4 5.20Up
Hindgut1169 104 of 4 2.40Up
Heart998 544 of 4 2.09Up
Fat body970 514 of 4 2.03Up
Ovary342 54 of 4 0.70None
Testis362 124 of 4 0.80None
Male accessory glands1901 204 of 4 4.00Up
Virgin spermatheca1907 1124 of 4 3.99Up
Mated spermatheca1837 524 of 4 3.84Up
Adult carcass743 274 of 4 1.60Up
Larval CNS812 464 of 4 1.70Up
Larval Salivary gland2062 1384 of 4 4.31Up
Larval midgut413 114 of 4 0.86None
Larval tubule2173 414 of 4 4.50Up
Larval hindgut1077 194 of 4 2.25Up
Larval fat body1135 764 of 4 2.40Up
Larval trachea709 834 of 4 1.48Up
Larval carcass708 284 of 4 1.48Up
S2 cells (growing)1406 424 of 4 2.94Up
Whole fly478 494 of 4

Looking for FBgn0013305. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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