FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0013308 through 18771 annotations produced 1 hits

Ornithine decarboxylase 2 (Odc2):

Annotation Number : CG8719
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013308
Gbrowse : chr2R:3894768-3896569 (+) // 100.0 //
Probeset : 1631439_at
Accessions : protein= NP_477053;, nucleotide= NM_057705;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004586 // ornithine decarboxylase activity //
FlyMine data for FBgn0013308.
Homophila reports that CG8719 is a close match (8e-78) to human gene ODC1 (NP_002530), a gene associated with {Colonic adenoma recurrence, reduced risk of}, 114500 (3).
VDRC has 4 RNAi stocks for FBgn0013308 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.30	None
Head	13 ± 1	4 of 4	1.80	None
Eye	14 ± 1	4 of 4	2.03	None
Thoracicoabdominal ganglion	4 ± 0	0 of 4	0.60	None
Salivary gland	5 ± 3	0 of 4	0.79	None
Crop	1 ± 0	0 of 4	0.20	None
Midgut	2 ± 1	0 of 4	0.30	None
Tubule	2 ± 1	0 of 4	0.40	Down
Hindgut	3 ± 0	0 of 4	0.50	None
Heart	121 ± 19	4 of 4	16.45	Up
Fat body	209 ± 9	4 of 4	28.44	Up
Ovary	0 ± 0	0 of 4	0.10	None
Testis	21 ± 1	4 of 4	3.00	Up
Male accessory glands	6 ± 1	0 of 4	0.90	None
Virgin spermatheca	217 ± 22	4 of 4	29.55	Up
Mated spermatheca	161 ± 20	4 of 4	21.95	Up
Adult carcass	45 ± 6	4 of 4	6.10	Up
Larval CNS	1 ± 1	0 of 4	0.16	None
Larval Salivary gland	3 ± 1	0 of 4	0.42	None
Larval midgut	2 ± 1	0 of 4	0.38	None
Larval tubule	5 ± 0	0 of 4	0.70	None
Larval hindgut	4 ± 1	1 of 4	0.63	None
Larval fat body	178 ± 9	4 of 4	24.20	Up
Larval trachea	2 ± 1	0 of 4	0.29	None
Larval carcass	2 ± 1	0 of 4	0.32	None
S2 cells (growing)	2 ± 0	0 of 4	0.27	None
Whole fly	7 ± 2	1 of 4

Looking for FBgn0013308. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720