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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013325 through 18771 annotations produced 1 hits



Ribosomal protein L11 (RpL11):

Annotation Number : CG7726
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013325
Gbrowse : chr2R:15329853-15331024 (+) // 100.0 //
Probeset : 1630813_at
Accessions : protein= NP_477054;, nucleotide= NM_057706;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0013325.
VDRC has 4 RNAi stocks for FBgn0013325 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2822 ± 294 of 4 0.70Down
Head4795 ± 1654 of 4 1.10None
Eye6536 ± 1804 of 4 1.54Up
Thoracicoabdominal ganglion3740 ± 1254 of 4 0.90None
Salivary gland11037 ± 3264 of 4 2.61Up
Crop5849 ± 3304 of 4 1.40Up
Midgut5172 ± 1264 of 4 1.20Up
Tubule5053 ± 584 of 4 1.20Up
Hindgut5228 ± 1414 of 4 1.20Up
Heart8044 ± 5614 of 4 1.90Up
Fat body6039 ± 8674 of 4 1.43Up
Ovary3417 ± 904 of 4 0.80Down
Testis1004 ± 424 of 4 0.20Down
Male accessory glands9319 ± 3824 of 4 2.20Up
Virgin spermatheca5922 ± 2244 of 4 1.40Up
Mated spermatheca6022 ± 2134 of 4 1.42Up
Adult carcass6211 ± 1944 of 4 1.50Up
Larval CNS2752 ± 2024 of 4 0.65Down
Larval Salivary gland7087 ± 3154 of 4 1.67Up
Larval midgut4315 ± 1614 of 4 1.02None
Larval tubule4584 ± 774 of 4 1.10None
Larval hindgut4433 ± 554 of 4 1.05None
Larval fat body7533 ± 8074 of 4 1.80Up
Larval trachea7032 ± 3294 of 4 1.66Up
Larval carcass4925 ± 3674 of 4 1.16None
S2 cells (growing)4673 ± 1054 of 4 1.10None
Whole fly4233 ± 1744 of 4

Looking for FBgn0013325. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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