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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013334 through 18771 annotations produced 2 hits



Synapse-associated protein 47kD (Sap47):

Annotation Number : CG8884
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013334
Gbrowse : chr3R:11760840-11783119 (+) // 99.51 //
Probeset : 1630169_a_at
Accessions : protein= NP_524371; /// NP_732088; /// NP_732089; /// NP_732090; /// NP_732091; /// NP_732092; /// NP_732093; /// NP_732094;, nucleotide= NM_079647; /// NM_169684; /// NM_169685; /// NM_169686; /// NM_169687; /// NM_169688; /// NM_169689; /// NM_169690;
Pathway : 0045202 // synapse // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0013334.
BioGrid reports that CG8884 interacts with CG9654 .
TRiP has 1 RNAi stocks for FBgn0013334 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013334 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1928 354 of 415.20Up
Head749 544 of 4 5.90Up
Eye1244 874 of 4 9.79Up
Thoracicoabdominal ganglion2787 764 of 421.90Up
Salivary gland62 74 of 4 0.49Down
Crop29 64 of 4 0.20Down
Midgut21 14 of 4 0.20Down
Tubule18 04 of 4 0.10Down
Hindgut24 14 of 4 0.20Down
Heart21 04 of 4 0.17Down
Fat body43 134 of 4 0.34Down
Ovary6 04 of 4 0.10Down
Testis5 12 of 4 0.00Down
Male accessory glands40 34 of 4 0.30Down
Virgin spermatheca54 84 of 4 0.43Down
Mated spermatheca80 164 of 4 0.63None
Adult carcass54 114 of 4 0.40Down
Larval CNS189 134 of 4 1.49Up
Larval Salivary gland37 34 of 4 0.29Down
Larval midgut9 13 of 4 0.08Down
Larval tubule21 24 of 4 0.20Down
Larval hindgut14 04 of 4 0.12Down
Larval fat body16 23 of 4 0.10Down
Larval trachea57 394 of 4 0.45Down
Larval carcass15 14 of 4 0.13Down
S2 cells (growing)13 04 of 4 0.11Down
Whole fly127 184 of 4



Synapse-associated protein 47kD (Sap47):

Annotation Number : CG8884
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013334
Gbrowse : chr3R:11760840-11785462 (+) // 100.0 //
Probeset : 1637387_s_at
Accessions : protein= NP_524371; /// NP_732088; /// NP_732089; /// NP_732090; /// NP_732091; /// NP_732092; /// NP_732093; /// NP_732094;, nucleotide= NM_079647; /// NM_169684; /// NM_169685; /// NM_169686; /// NM_169687; /// NM_169688; /// NM_169689; /// NM_169690;
Pathway : 0045202 // synapse // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0013334.
BioGrid reports that CG8884 interacts with CG9654 .
TRiP has 1 RNAi stocks for FBgn0013334 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013334 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 174 of 4 2.60Up
Head50 54 of 4 0.90None
Eye80 44 of 4 1.44Up
Thoracicoabdominal ganglion153 224 of 4 2.70Up
Salivary gland151 164 of 4 2.70Up
Crop54 44 of 4 1.00None
Midgut41 34 of 4 0.70None
Tubule44 14 of 4 0.80Down
Hindgut45 24 of 4 0.80None
Heart56 24 of 4 1.00None
Fat body46 24 of 4 0.83None
Ovary68 24 of 4 1.20None
Testis66 24 of 4 1.20None
Male accessory glands105 74 of 4 1.90Up
Virgin spermatheca29 24 of 4 0.52Down
Mated spermatheca37 34 of 4 0.67None
Adult carcass43 34 of 4 0.80None
Larval CNS72 64 of 4 1.30None
Larval Salivary gland165 104 of 4 2.96Up
Larval midgut42 14 of 4 0.76None
Larval tubule100 44 of 4 1.80Up
Larval hindgut63 34 of 4 1.14None
Larval fat body51 14 of 4 0.90None
Larval trachea41 24 of 4 0.74None
Larval carcass31 24 of 4 0.56Down
S2 cells (growing)67 14 of 4 1.21None
Whole fly55 64 of 4

Looking for FBgn0013334. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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