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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013343 through 18771 annotations produced 1 hits



():

Annotation Number : CG31136
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3R:19926797-19931465 (-) // 100.0 //
Probeset : 1624043_at
Accessions : protein= NP_001163710; /// NP_788729;, nucleotide= NM_001170239; /// NM_176552;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0016281 // eukaryotic translation initiation factor 4F c
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // i
Homophila reports that CG31136 is a close match (7e-20) to human gene FHL4;HLH4;HPLH4;STX11 (NP_003755), a gene associated with Hemophagocytic lymphohistiocytosis, familial, 4, 603552 (3).
BioGrid reports that CG31136 interacts with CG6625 CG6156 CG7110 CG6395 CG33101 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 84 of 4 7.40Up
Head19 32 of 4 1.60None
Eye36 54 of 4 2.92Up
Thoracicoabdominal ganglion92 84 of 4 7.50Up
Salivary gland29 33 of 4 2.35Up
Crop15 12 of 4 1.20None
Midgut31 33 of 4 2.50Up
Tubule7 00 of 4 0.60Down
Hindgut29 14 of 4 2.40Up
Heart43 14 of 4 3.46Up
Fat body8 10 of 4 0.66None
Ovary16 23 of 4 1.30None
Testis20 14 of 4 1.60Up
Male accessory glands21 23 of 4 1.70Up
Virgin spermatheca4 10 of 4 0.32Down
Mated spermatheca13 21 of 4 1.09None
Adult carcass15 41 of 4 1.30None
Larval CNS38 44 of 4 3.06Up
Larval Salivary gland26 24 of 4 2.14Up
Larval midgut26 32 of 4 2.15Up
Larval tubule13 12 of 4 1.10None
Larval hindgut32 24 of 4 2.60Up
Larval fat body9 21 of 4 0.80None
Larval trachea53 04 of 4 4.28Up
Larval carcass21 34 of 4 1.77Up
S2 cells (growing)51 14 of 4 4.15Up
Whole fly12 13 of 4

Looking for FBgn0013343. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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