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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0013348 through 18771 annotations produced 1 hits

Troponin C at 41C (TpnC41C):

Annotation Number : CG2981
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013348
Gbrowse : chr2R:953795-957619 (-) // 100.0 //
Probeset : 1625752_at
Accessions : protein= NP_523619;, nucleotide= NM_078895;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0013348.
BDGP gene expression has embryonic in situ data for TpnC41C: 8 pix of staining in 1 body parts.
Homophila reports that CG2981 is a close match (7e-14) to human gene CMD1Z;TNNC1 (NP_003271), a gene associated with Cardiomyopathy, dilated, 1Z, 611879 (3);Cardiomyopathy, familial hypertrophic, 192600 (3) (?).
TRiP has 1 RNAi stocks for FBgn0013348 available for purchase.
VDRC has 1 RNAi stocks for FBgn0013348 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head340 324 of 4 0.40Down
Eye22 44 of 4 0.03Down
Thoracicoabdominal ganglion59 124 of 4 0.10Down
Salivary gland8 20 of 4 0.01Down
Crop20 13 of 4 0.00Down
Midgut4 20 of 4 0.00Down
Tubule4 00 of 4 0.00Down
Hindgut13 12 of 4 0.00Down
Heart7 12 of 4 0.01Down
Fat body26 113 of 4 0.03Down
Ovary3 10 of 4 0.00Down
Testis3 00 of 4 0.00Down
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca2 10 of 4 0.00Down
Mated spermatheca1 00 of 4 0.00Down
Adult carcass2047 1734 of 4 2.70Up
Larval CNS2 20 of 4 0.00Down
Larval Salivary gland0 00 of 4 0.00Down
Larval midgut4 10 of 4 0.01Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut1 00 of 4 0.00Down
Larval fat body1 00 of 4 0.00Down
Larval trachea3 20 of 4 0.00Down
Larval carcass6 00 of 4 0.01Down
S2 cells (growing)1 00 of 4 0.00Down
Whole fly768 554 of 4

Looking for FBgn0013348. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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