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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013435 through 18771 annotations produced 1 hits



cdc2-related-kinase (cdc2rk):

Annotation Number : CG1362
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013435
Gbrowse : chr2R:5954721-5956199 (-) // 100.0 //
Probeset : 1624400_a_at
Accessions : protein= NP_523674; /// NP_724876;, nucleotide= NM_078950; /// NM_165734;
Pathway : via spliceosome // inferred by curator /// 0006468 // protein phosphorylation // inferred from electronic annotation //
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferre
FlyMine data for FBgn0013435.
Homophila reports that CG1362 is a close match (3e-11) to human gene IPD1;IRAK4;REN64 (NP_057207), a gene associated with Invasive pneumococcal disease, recurrent isolated, 1, 610799 (3);IRAK4 deficiency, 607676 (3).
TRiP has 1 RNAi stocks for FBgn0013435 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013435 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 ± 44 of 4 1.70Up
Head32 ± 23 of 4 1.20None
Eye54 ± 64 of 4 1.94Up
Thoracicoabdominal ganglion40 ± 24 of 4 1.40None
Salivary gland42 ± 40 of 4 1.51None
Crop33 ± 24 of 4 1.20None
Midgut18 ± 20 of 4 0.60None
Tubule32 ± 23 of 4 1.10None
Hindgut25 ± 13 of 4 0.90None
Heart21 ± 22 of 4 0.76None
Fat body24 ± 80 of 4 0.87None
Ovary41 ± 14 of 4 1.50None
Testis22 ± 14 of 4 0.80None
Male accessory glands34 ± 10 of 4 1.20None
Virgin spermatheca18 ± 03 of 4 0.65None
Mated spermatheca26 ± 34 of 4 0.95None
Adult carcass12 ± 30 of 4 0.40Down
Larval CNS75 ± 74 of 4 2.66Up
Larval Salivary gland65 ± 23 of 4 2.32Up
Larval midgut19 ± 20 of 4 0.69None
Larval tubule24 ± 24 of 4 0.90None
Larval hindgut31 ± 14 of 4 1.10None
Larval fat body31 ± 32 of 4 1.10None
Larval trachea40 ± 104 of 4 1.42None
Larval carcass30 ± 30 of 4 1.08None
S2 cells (growing)50 ± 24 of 4 1.78Up
Whole fly28 ± 43 of 4

Looking for FBgn0013435. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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