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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013469 through 18771 annotations produced 2 hits



klumphuss (klu):

Annotation Number : CG12296
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013469
Gbrowse : chr3L:10974831-11001924 (-) // 99.85 //
Probeset : 1629347_at
Accessions : protein= NP_477062;, nucleotide= NM_057714;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0013469.
BDGP gene expression has embryonic in situ data for klu: 24 pix of staining in 18 body parts.
Homophila reports that CG12296 is a close match (4e-11) to human gene NIL2A;TCF8;ZEB1 (NP_110378), a gene associated with Corneal dystrophy, posterior polymorphous, 3, 609141 (3).
BioGrid reports that CG12296 interacts with CG3796 .
TRiP has 1 RNAi stocks for FBgn0013469 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013469 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 00 of 4 0.90Down
Head20 10 of 4 0.90None
Eye31 24 of 4 1.40Up
Thoracicoabdominal ganglion46 54 of 4 2.10Up
Salivary gland16 40 of 4 0.73None
Crop14 10 of 4 0.70Down
Midgut39 34 of 4 1.80Up
Tubule4 00 of 4 0.20Down
Hindgut23 10 of 4 1.10None
Heart130 54 of 4 5.87Up
Fat body61 53 of 4 2.77Up
Ovary9 00 of 4 0.40Down
Testis6 10 of 4 0.30Down
Male accessory glands9 30 of 4 0.40Down
Virgin spermatheca33 11 of 4 1.50Up
Mated spermatheca24 10 of 4 1.11None
Adult carcass51 93 of 4 2.30Up
Larval CNS119 74 of 4 5.37Up
Larval Salivary gland6 10 of 4 0.28Down
Larval midgut17 12 of 4 0.79Down
Larval tubule3 10 of 4 0.20Down
Larval hindgut25 00 of 4 1.14Up
Larval fat body19 51 of 4 0.90None
Larval trachea13 11 of 4 0.60Down
Larval carcass30 30 of 4 1.36None
S2 cells (growing)1 00 of 4 0.08Down
Whole fly22 02 of 4



klumphuss (klu):

Annotation Number : HDC09524
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013469
Gbrowse : chr3L:10988421-10992154 (-) // 100.0 //
Probeset : 1633561_at
Accessions : protein= NP_477062;, nucleotide= NM_057714;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0013469.
BDGP gene expression has embryonic in situ data for klu: 24 pix of staining in 18 body parts.
TRiP has 1 RNAi stocks for FBgn0013469 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013469 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 1.30None
Head4 10 of 4 1.40None
Eye3 10 of 4 1.07None
Thoracicoabdominal ganglion6 10 of 4 1.80None
Salivary gland16 40 of 4 4.46None
Crop8 11 of 4 2.30Up
Midgut10 21 of 4 3.00None
Tubule6 10 of 4 1.70None
Hindgut5 11 of 4 1.50None
Heart3 10 of 4 1.03None
Fat body11 20 of 4 3.14Up
Ovary4 00 of 4 1.30None
Testis4 10 of 4 1.10None
Male accessory glands5 10 of 4 1.40None
Virgin spermatheca9 10 of 4 2.52None
Mated spermatheca7 10 of 4 2.07None
Adult carcass2 00 of 4 0.70None
Larval CNS4 20 of 4 1.13None
Larval Salivary gland5 00 of 4 1.60None
Larval midgut12 11 of 4 3.38Up
Larval tubule6 12 of 4 1.80None
Larval hindgut5 10 of 4 1.51None
Larval fat body4 10 of 4 1.10None
Larval trachea5 30 of 4 1.56None
Larval carcass7 00 of 4 2.14Up
S2 cells (growing)3 10 of 4 0.97None
Whole fly3 00 of 4

Looking for FBgn0013469. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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