FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0013469 through 18771 annotations produced 2 hits

klumphuss (klu):

Annotation Number : HDC09524
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013469
Gbrowse : chr3L:10988421-10992154 (-) // 100.0 //
Probeset : 1633561_at
Accessions : protein= NP_477062;, nucleotide= NM_057714;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0013469.
BDGP gene expression has embryonic in situ data for klu: 24 pix of staining in 18 body parts.
TRiP has 1 RNAi stocks for FBgn0013469 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013469 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	1.30	None
Head	4 ± 1	0 of 4	1.40	None
Eye	3 ± 1	0 of 4	1.07	None
Thoracicoabdominal ganglion	6 ± 1	0 of 4	1.80	None
Salivary gland	16 ± 4	0 of 4	4.46	None
Crop	8 ± 1	1 of 4	2.30	Up
Midgut	10 ± 2	1 of 4	3.00	None
Tubule	6 ± 1	0 of 4	1.70	None
Hindgut	5 ± 1	1 of 4	1.50	None
Heart	3 ± 1	0 of 4	1.03	None
Fat body	11 ± 2	0 of 4	3.14	Up
Ovary	4 ± 0	0 of 4	1.30	None
Testis	4 ± 1	0 of 4	1.10	None
Male accessory glands	5 ± 1	0 of 4	1.40	None
Virgin spermatheca	9 ± 1	0 of 4	2.52	None
Mated spermatheca	7 ± 1	0 of 4	2.07	None
Adult carcass	2 ± 0	0 of 4	0.70	None
Larval CNS	4 ± 2	0 of 4	1.13	None
Larval Salivary gland	5 ± 0	0 of 4	1.60	None
Larval midgut	12 ± 1	1 of 4	3.38	Up
Larval tubule	6 ± 1	2 of 4	1.80	None
Larval hindgut	5 ± 1	0 of 4	1.51	None
Larval fat body	4 ± 1	0 of 4	1.10	None
Larval trachea	5 ± 3	0 of 4	1.56	None
Larval carcass	7 ± 0	0 of 4	2.14	Up
S2 cells (growing)	3 ± 1	0 of 4	0.97	None
Whole fly	3 ± 0	0 of 4

klumphuss (klu):

Annotation Number : CG12296
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013469
Gbrowse : chr3L:10974831-11001924 (-) // 99.85 //
Probeset : 1629347_at
Accessions : protein= NP_477062;, nucleotide= NM_057714;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0013469.
BDGP gene expression has embryonic in situ data for klu: 24 pix of staining in 18 body parts.
Homophila reports that CG12296 is a close match (4e-11) to human gene NIL2A;TCF8;ZEB1 (NP_110378), a gene associated with Corneal dystrophy, posterior polymorphous, 3, 609141 (3).
BioGrid reports that CG12296 interacts with CG3796 .
TRiP has 1 RNAi stocks for FBgn0013469 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013469 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	19 ± 0	0 of 4	0.90	Down
Head	20 ± 1	0 of 4	0.90	None
Eye	31 ± 2	4 of 4	1.40	Up
Thoracicoabdominal ganglion	46 ± 5	4 of 4	2.10	Up
Salivary gland	16 ± 4	0 of 4	0.73	None
Crop	14 ± 1	0 of 4	0.70	Down
Midgut	39 ± 3	4 of 4	1.80	Up
Tubule	4 ± 0	0 of 4	0.20	Down
Hindgut	23 ± 1	0 of 4	1.10	None
Heart	130 ± 5	4 of 4	5.87	Up
Fat body	61 ± 5	3 of 4	2.77	Up
Ovary	9 ± 0	0 of 4	0.40	Down
Testis	6 ± 1	0 of 4	0.30	Down
Male accessory glands	9 ± 3	0 of 4	0.40	Down
Virgin spermatheca	33 ± 1	1 of 4	1.50	Up
Mated spermatheca	24 ± 1	0 of 4	1.11	None
Adult carcass	51 ± 9	3 of 4	2.30	Up
Larval CNS	119 ± 7	4 of 4	5.37	Up
Larval Salivary gland	6 ± 1	0 of 4	0.28	Down
Larval midgut	17 ± 1	2 of 4	0.79	Down
Larval tubule	3 ± 1	0 of 4	0.20	Down
Larval hindgut	25 ± 0	0 of 4	1.14	Up
Larval fat body	19 ± 5	1 of 4	0.90	None
Larval trachea	13 ± 1	1 of 4	0.60	Down
Larval carcass	30 ± 3	0 of 4	1.36	None
S2 cells (growing)	1 ± 0	0 of 4	0.08	Down
Whole fly	22 ± 0	2 of 4

Looking for FBgn0013469. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720