FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0013718 through 18771 annotations produced 2 hits

nuclear-fallout (nuf):

Annotation Number : CG32140
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013718
Gbrowse : chr3L:14212844-14219581 (+) // 100.0 //
Probeset : 1634973_s_at
Accessions : protein= NP_001034006; /// NP_001034007; /// NP_001034008; /// NP_001034009; /// NP_001034010; /// NP_001034011;, nucleotide= NM_001038917; /// NM_001038918; /// NM_001038919; /// NM_001038920; /// NM_001038921; /// NM_001038922;
Pathway : actomyosin contractile ring assembly // non-traceable author statement /// 0007017 // microtubule-based process // infe
Interpro : 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // traceable author statement /// 0005875
FlyMine data for FBgn0013718.
BDGP gene expression has embryonic in situ data for nuf: 39 pix of staining in 16 body parts.
TRiP has 3 RNAi stocks for FBgn0013718 available for purchase.
VDRC has 5 RNAi stocks for FBgn0013718 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	20 ± 1	4 of 4	1.80	Up
Head	26 ± 4	3 of 4	2.20	Up
Eye	6 ± 2	1 of 4	0.56	None
Thoracicoabdominal ganglion	29 ± 7	4 of 4	2.50	None
Salivary gland	32 ± 13	2 of 4	2.75	None
Crop	74 ± 10	4 of 4	6.40	Up
Midgut	9 ± 2	1 of 4	0.80	None
Tubule	5 ± 1	0 of 4	0.50	Down
Hindgut	18 ± 1	4 of 4	1.60	Up
Heart	6 ± 2	1 of 4	0.56	None
Fat body	16 ± 6	3 of 4	1.39	None
Ovary	2 ± 1	0 of 4	0.20	Down
Testis	17 ± 0	3 of 4	1.50	Up
Male accessory glands	9 ± 2	0 of 4	0.80	None
Virgin spermatheca	8 ± 1	1 of 4	0.72	None
Mated spermatheca	9 ± 2	2 of 4	0.82	None
Adult carcass	29 ± 2	4 of 4	2.60	Up
Larval CNS	10 ± 1	4 of 4	0.87	None
Larval Salivary gland	8 ± 2	0 of 4	0.70	None
Larval midgut	9 ± 1	1 of 4	0.85	None
Larval tubule	8 ± 2	3 of 4	0.70	None
Larval hindgut	13 ± 1	4 of 4	1.14	None
Larval fat body	36 ± 4	4 of 4	3.20	Up
Larval trachea	4 ± 1	0 of 4	0.36	Down
Larval carcass	10 ± 1	2 of 4	0.92	None
S2 cells (growing)	27 ± 1	4 of 4	2.34	Up
Whole fly	11 ± 0	4 of 4

chr3L:14183971-14226351 (+) // 100.0 // (nuclear-fallout):

Annotation Number : CG7867
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1624744_a_at
Accessions : protein= , nucleotide= NP_001034006; /// NP_001034007; /// NP_001034008; /// NP_001034009; /// NP_001034010; /// NP_001034011;
Pathway : "0000915 // cytokinesis
Interpro : actomyosin contractile ring assembly // non-traceable author statement /// 0007017 // microtubule-based process // infe
FlyMine data for full length.
BioGrid reports that CG7867 interacts with CG8669 CG9609 CG3610 CG5433 CG4060 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	573 ± 8	4 of 4	1.80	Up
Head	838 ± 25	4 of 4	2.60	Up
Eye	1444 ± 102	4 of 4	4.41	Up
Thoracicoabdominal ganglion	810 ± 15	4 of 4	2.50	Up
Salivary gland	1557 ± 79	4 of 4	4.75	Up
Crop	1806 ± 58	4 of 4	5.50	Up
Midgut	158 ± 8	4 of 4	0.50	Down
Tubule	380 ± 45	4 of 4	1.20	None
Hindgut	749 ± 13	4 of 4	2.30	Up
Heart	1537 ± 59	4 of 4	4.69	Up
Fat body	436 ± 35	4 of 4	1.33	Up
Ovary	251 ± 8	4 of 4	0.80	Down
Testis	132 ± 4	4 of 4	0.40	Down
Male accessory glands	137 ± 6	4 of 4	0.40	Down
Virgin spermatheca	459 ± 24	4 of 4	1.40	Up
Mated spermatheca	494 ± 32	4 of 4	1.51	Up
Adult carcass	577 ± 20	4 of 4	1.80	Up
Larval CNS	314 ± 20	4 of 4	0.96	None
Larval Salivary gland	223 ± 40	4 of 4	0.68	None
Larval midgut	181 ± 11	4 of 4	0.55	Down
Larval tubule	366 ± 21	4 of 4	1.10	None
Larval hindgut	623 ± 11	4 of 4	1.90	Up
Larval fat body	629 ± 46	4 of 4	1.90	Up
Larval trachea	670 ± 51	4 of 4	2.05	Up
Larval carcass	632 ± 48	4 of 4	1.93	Up
S2 cells (growing)	143 ± 16	4 of 4	0.44	Down
Whole fly	327 ± 18	4 of 4

Looking for FBgn0013718. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720