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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013720 through 18771 annotations produced 1 hits



megatrachea (pck):

Annotation Number : CG14779
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013720
Gbrowse : chrX:1364698-1366363 (+) // 100.0 //
Probeset : 1628135_s_at
Accessions : protein= NP_001033820; /// NP_569919; /// NP_726742;, nucleotide= NM_001038731; /// NM_130563; /// NM_166887;
Pathway : open tracheal system // inferred from mutant phenotype /// 0060857 // establishment of glial blood-brain barrier // inf
Interpro : 0005918 // septate junction // inferred from sequence or structural similarity
FlyMine data for FBgn0013720.
BioGrid reports that CG14779 interacts with CG4326 CG7786 .
TRiP has 1 RNAi stocks for FBgn0013720 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013720 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain160 34 of 4 0.50Down
Head359 134 of 4 1.20Up
Eye564 94 of 4 1.91Up
Thoracicoabdominal ganglion135 54 of 4 0.50Down
Salivary gland1954 714 of 4 6.62Up
Crop979 124 of 4 3.30Up
Midgut118 114 of 4 0.40Down
Tubule128 74 of 4 0.40Down
Hindgut801 124 of 4 2.70Up
Heart91 14 of 4 0.31Down
Fat body64 84 of 4 0.22Down
Ovary457 44 of 4 1.50Up
Testis186 124 of 4 0.60Down
Male accessory glands866 504 of 4 2.90Up
Virgin spermatheca446 14 of 4 1.51Up
Mated spermatheca671 754 of 4 2.28Up
Adult carcass274 144 of 4 0.90None
Larval CNS267 154 of 4 0.91Down
Larval Salivary gland1659 414 of 4 5.62Up
Larval midgut152 64 of 4 0.52Down
Larval tubule186 24 of 4 0.60Down
Larval hindgut1028 434 of 4 3.48Up
Larval fat body134 114 of 4 0.50Down
Larval trachea1518 934 of 4 5.14Up
Larval carcass458 104 of 4 1.55Up
S2 cells (growing)315 44 of 4 1.07Up
Whole fly295 44 of 4

Looking for FBgn0013720. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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