Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013726 through 18771 annotations produced 1 hits



chr2R:4124773-4127835 (+) // 100.0 // (septin):

Annotation Number : CG8705
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1627280_s_at
Accessions : protein= , nucleotide= NP_477064; /// NP_724659;
Pathway : "0000910 // cytokinesis // inferred from mutant phenotype /// 0000910 // cytokinesis // inferred from sequence or struct
Interpro : actomyosin contractile ring assembly // non-traceable author statement /// 0006903 // vesicle targeting // traceable au
FlyMine data for full length.
Homophila reports that CG8705 is a close match (5e-75) to human gene MSF;MSF1;NAPB;SEPT9 (NP_006631), a gene associated with Amyotrophy, hereditary neuralgic, 162100 (3);Leukemia, acute myeloid, therapy-related (1);Ovarian carcinoma (1).
BioGrid reports that CG8705 interacts with CG9399 CG9375 CG9949 CG9949 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain786 ± 144 of 4 1.50Up
Head344 ± 214 of 4 0.70Down
Eye161 ± 54 of 4 0.31Down
Thoracicoabdominal ganglion767 ± 244 of 4 1.50Up
Salivary gland551 ± 364 of 4 1.06None
Crop180 ± 114 of 4 0.30Down
Midgut329 ± 84 of 4 0.60Down
Tubule281 ± 194 of 4 0.50Down
Hindgut248 ± 54 of 4 0.50Down
Heart357 ± 184 of 4 0.69Down
Fat body103 ± 244 of 4 0.20Down
Ovary1009 ± 184 of 4 1.90Up
Testis123 ± 74 of 4 0.20Down
Male accessory glands207 ± 34 of 4 0.40Down
Virgin spermatheca91 ± 54 of 4 0.17Down
Mated spermatheca117 ± 84 of 4 0.23Down
Adult carcass174 ± 84 of 4 0.30Down
Larval CNS1062 ± 384 of 4 2.04Up
Larval Salivary gland755 ± 244 of 4 1.45Up
Larval midgut501 ± 424 of 4 0.96None
Larval tubule968 ± 334 of 4 1.90Up
Larval hindgut663 ± 494 of 4 1.27None
Larval fat body160 ± 134 of 4 0.30Down
Larval trachea793 ± 1194 of 4 1.52Up
Larval carcass464 ± 564 of 4 0.89None
S2 cells (growing)1062 ± 274 of 4 2.04Up
Whole fly522 ± 274 of 4

Looking for FBgn0013726. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime