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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013732 through 18771 annotations produced 1 hits



scrambled (sced):

Annotation Number : CG3273
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013732
Gbrowse : chr2R:2544832-2548129 (+) // 100.0 //
Probeset : 1633243_at
Accessions : protein= NP_610219;, nucleotide= NM_136375;
Pathway : 0005813 // centrosome // inferred from direct assay
FlyMine data for FBgn0013732.
BioGrid reports that CG3273 interacts with CG3510 .
TRiP has 1 RNAi stocks for FBgn0013732 available for purchase.
VDRC has 3 RNAi stocks for FBgn0013732 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain148 ± 54 of 4 1.40Up
Head29 ± 44 of 4 0.30Down
Eye14 ± 24 of 4 0.13Down
Thoracicoabdominal ganglion103 ± 24 of 4 1.00None
Salivary gland7 ± 20 of 4 0.07Down
Crop18 ± 13 of 4 0.20Down
Midgut16 ± 12 of 4 0.20Down
Tubule10 ± 31 of 4 0.10Down
Hindgut18 ± 23 of 4 0.20Down
Heart3 ± 12 of 4 0.03Down
Fat body7 ± 50 of 4 0.07Down
Ovary426 ± 84 of 4 4.00Up
Testis22 ± 14 of 4 0.20Down
Male accessory glands17 ± 24 of 4 0.20Down
Virgin spermatheca7 ± 20 of 4 0.07Down
Mated spermatheca9 ± 20 of 4 0.08Down
Adult carcass10 ± 40 of 4 0.10Down
Larval CNS171 ± 74 of 4 1.59Up
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut8 ± 00 of 4 0.08Down
Larval tubule9 ± 20 of 4 0.10Down
Larval hindgut14 ± 00 of 4 0.14Down
Larval fat body17 ± 12 of 4 0.20Down
Larval trachea46 ± 84 of 4 0.43Down
Larval carcass18 ± 14 of 4 0.17Down
S2 cells (growing)39 ± 14 of 4 0.37Down
Whole fly107 ± 74 of 4

Looking for FBgn0013732. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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