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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013733 through 18771 annotations produced 1 hits



kakapo (shot):

Annotation Number : CG18076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013733
Gbrowse : chr2R:9751741-9829615 (-) // 99.93 //
Probeset : 1633745_a_at
Accessions : protein= NP_001137657; /// NP_001137658; /// NP_001137659; /// NP_001137660; /// NP_001137661; /// NP_001163147; /// NP_001163148; /// NP_001163149; /// NP_001163150; /// NP_523733; /// NP_725335; /// NP_725336; /// NP_725337; /// NP_725338; /// NP_725339;, nucleotide= NM_001144185; /// NM_001144186; /// NM_001144187; /// NM_001144188; /// NM_001144189; /// NM_001169676; /// NM_001169677; /// NM_001169678; /// NM_001169679; /// NM_079009; /// NM_166015; /// NM_166016; /// NM_166017; /// NM_166018; /// NM_166019;
Pathway : open tracheal system // inferred from expression pattern /// 0035147 // branch fusion
Interpro : open tracheal system // inferred from mutant phenotype /// 0035147 // branch fusion
FlyMine data for FBgn0013733.
Homophila reports that CG18076 is a close match (5e-11) to human gene EHBP1;HPC12;KIAA0903 (NP_056067), a gene associated with {Prostate cancer, hereditary, 12}, 611868 (3).
BioGrid reports that CG18076 interacts with CG7379 CG1560 CG1560 .
TRiP has 2 RNAi stocks for FBgn0013733 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain715 154 of 4 1.80Up
Head574 194 of 4 1.40Up
Eye956 694 of 4 2.38Up
Thoracicoabdominal ganglion709 384 of 4 1.80Up
Salivary gland518 144 of 4 1.29Up
Crop1289 564 of 4 3.20Up
Midgut508 104 of 4 1.30Up
Tubule234 44 of 4 0.60Down
Hindgut886 244 of 4 2.20Up
Heart702 144 of 4 1.75Up
Fat body549 354 of 4 1.37Up
Ovary181 44 of 4 0.50Down
Testis83 24 of 4 0.20Down
Male accessory glands417 254 of 4 1.00None
Virgin spermatheca584 464 of 4 1.45Up
Mated spermatheca930 594 of 4 2.32Up
Adult carcass976 254 of 4 2.40Up
Larval CNS704 424 of 4 1.75Up
Larval Salivary gland621 224 of 4 1.55Up
Larval midgut479 154 of 4 1.19None
Larval tubule540 284 of 4 1.30Up
Larval hindgut1152 274 of 4 2.87Up
Larval fat body364 174 of 4 0.90None
Larval trachea2337 1114 of 4 5.81Up
Larval carcass1312 174 of 4 3.27Up
S2 cells (growing)106 84 of 4 0.27Down
Whole fly402 254 of 4

Looking for FBgn0013733. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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