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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013749 through 18771 annotations produced 1 hits



ADP ribosylation factor II (Arf102F):

Annotation Number : CG11027
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013749
Gbrowse : chr4:1144799-1145807 (+) // 100.0 //
Probeset : 1624693_at
Accessions : protein= NP_524631;, nucleotide= NM_079892;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electron
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable aut
FlyMine data for FBgn0013749.
BDGP gene expression has embryonic in situ data for Arf102F: 4 pix of staining in 1 body parts.
Homophila reports that CG11027 is a close match (4e-19) to human gene CMRD;SAR1B;SARA2 (NP_057187), a gene associated with Anderson disease, 607689 (3);Chylomicron retention disease, 246700 (3).
BioGrid reports that CG11027 interacts with CG31482 CG4896 .
TRiP has 1 RNAi stocks for FBgn0013749 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013749 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain741 ± 174 of 4 0.80Down
Head898 ± 304 of 4 1.00None
Eye1314 ± 334 of 4 1.48Up
Thoracicoabdominal ganglion772 ± 174 of 4 0.90Down
Salivary gland5422 ± 1824 of 4 6.12Up
Crop1094 ± 374 of 4 1.20Up
Midgut1332 ± 394 of 4 1.50Up
Tubule1347 ± 1404 of 4 1.50Up
Hindgut845 ± 274 of 4 1.00None
Heart1090 ± 464 of 4 1.23Up
Fat body927 ± 524 of 4 1.05None
Ovary1432 ± 354 of 4 1.60Up
Testis731 ± 164 of 4 0.80Down
Male accessory glands3046 ± 1764 of 4 3.40Up
Virgin spermatheca976 ± 704 of 4 1.10None
Mated spermatheca1224 ± 774 of 4 1.38Up
Adult carcass693 ± 364 of 4 0.80Down
Larval CNS907 ± 234 of 4 1.02None
Larval Salivary gland3513 ± 1574 of 4 3.97Up
Larval midgut1142 ± 924 of 4 1.29None
Larval tubule1271 ± 494 of 4 1.40Up
Larval hindgut910 ± 304 of 4 1.03None
Larval fat body1040 ± 774 of 4 1.20None
Larval trachea1214 ± 1464 of 4 1.37Up
Larval carcass860 ± 394 of 4 0.97None
S2 cells (growing)1053 ± 64 of 4 1.19Up
Whole fly885 ± 214 of 4

Looking for FBgn0013749. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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