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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013751 through 18771 annotations produced 2 hits



arrowhead (Awh):

Annotation Number : HDC08314
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013751
Gbrowse : chr3L:3845541-3846169 (+) // 100.0 //
Probeset : 1624879_at
Accessions : protein= NP_523907; /// NP_728906;, nucleotide= NM_079183; /// NM_168042;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for FBgn0013751.
TRiP has 1 RNAi stocks for FBgn0013751 available for purchase.
VDRC has 3 RNAi stocks for FBgn0013751 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.60None
Head1 00 of 4 0.90None
Eye3 00 of 4 2.42None
Thoracicoabdominal ganglion2 10 of 4 1.90None
Salivary gland2 00 of 4 1.60None
Crop2 00 of 4 2.20None
Midgut3 10 of 4 2.60None
Tubule2 00 of 4 1.60None
Hindgut1 00 of 4 1.10None
Heart3 00 of 4 2.53Up
Fat body7 30 of 4 5.94Up
Ovary1 00 of 4 0.80None
Testis0 00 of 4 0.40None
Male accessory glands1 10 of 4 1.50None
Virgin spermatheca3 10 of 4 2.79None
Mated spermatheca5 20 of 4 3.94None
Adult carcass1 00 of 4 0.80None
Larval CNS2 00 of 4 1.77None
Larval Salivary gland2 00 of 4 1.62None
Larval midgut4 10 of 4 3.40None
Larval tubule2 00 of 4 1.60None
Larval hindgut2 00 of 4 1.81None
Larval fat body3 10 of 4 2.70None
Larval trachea3 20 of 4 2.55None
Larval carcass4 20 of 4 3.57None
S2 cells (growing)1 00 of 4 0.98None
Whole fly1 00 of 4



arrowhead (Awh):

Annotation Number : CG1072
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013751
Gbrowse : chr3L:3846152-3861685 (+) // 100.0 //
Probeset : 1639545_a_at
Accessions : protein= NP_523907; /// NP_728906;, nucleotide= NM_079183; /// NM_168042;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for FBgn0013751.
Homophila reports that CG1072 is a close match (1e-11) to human gene ATBF1 (NP_008816), a gene associated with {Prostate cancer, susceptibility to}, 176807 (3).
TRiP has 1 RNAi stocks for FBgn0013751 available for purchase.
VDRC has 3 RNAi stocks for FBgn0013751 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 24 of 4 5.80Up
Head22 14 of 4 1.50Up
Eye5 11 of 4 0.40Down
Thoracicoabdominal ganglion4 10 of 4 0.30Down
Salivary gland894 234 of 461.29Up
Crop64 34 of 4 4.40Up
Midgut0 00 of 4 0.00Down
Tubule3 00 of 4 0.20Down
Hindgut11 11 of 4 0.80None
Heart0 00 of 4 0.06Down
Fat body14 22 of 4 0.99None
Ovary1 00 of 4 0.10Down
Testis1 10 of 4 0.10Down
Male accessory glands191 124 of 413.10Up
Virgin spermatheca10 10 of 4 0.69None
Mated spermatheca12 41 of 4 0.84None
Adult carcass10 00 of 4 0.70Down
Larval CNS44 34 of 4 3.05Up
Larval Salivary gland119 84 of 4 8.16Up
Larval midgut1 10 of 4 0.13Down
Larval tubule4 10 of 4 0.30Down
Larval hindgut9 21 of 4 0.68None
Larval fat body8 21 of 4 0.60Down
Larval trachea8 32 of 4 0.57Down
Larval carcass66 64 of 4 4.56Up
S2 cells (growing)1 00 of 4 0.11Down
Whole fly14 13 of 4

Looking for FBgn0013751. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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