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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: 16/4/2014: We have just migrated to a new server (the old one ran XP!).
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013753 through 18771 annotations produced 1 hits



Big brother (Bgb):

Annotation Number : CG7959
Flybase ID : FBgn0013753
Gbrowse : chr3L:1639701-1640948 (+) // 100.0 //
Probeset : 1623365_at
Accessions : protein= NP_477065;, nucleotide= NM_057717;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator act
FlyMine data for FBgn0013753.
BDGP gene expression has embryonic in situ data for Bgb: 15 pix of staining in 6 body parts.
Homophila reports that CG7959 is a close match (5e-39) to human gene CBFB (NP_001746), a gene associated with Myeloid leukemia, acute, M4Eo subtype (3).
BioGrid reports that CG7959 interacts with CG9173 CG1689 CG1689 CG1689 CG1689 CG7960 CG7960 .
TRiP has 1 RNAi stocks for FBgn0013753 available for purchase.
VDRC has 1 RNAi stocks for FBgn0013753 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain365 54 of 4 3.30Up
Head135 54 of 4 1.20Up
Eye167 64 of 4 1.52Up
Thoracicoabdominal ganglion342 104 of 4 3.10Up
Salivary gland20 51 of 4 0.19Down
Crop66 34 of 4 0.60Down
Midgut17 24 of 4 0.20Down
Tubule11 21 of 4 0.10Down
Hindgut35 14 of 4 0.30Down
Heart52 24 of 4 0.48Down
Fat body27 54 of 4 0.24Down
Ovary284 54 of 4 2.60Up
Testis23 24 of 4 0.20Down
Male accessory glands21 53 of 4 0.20Down
Virgin spermatheca20 14 of 4 0.18Down
Mated spermatheca22 24 of 4 0.20Down
Adult carcass39 14 of 4 0.40Down
Larval CNS535 344 of 4 4.85Up
Larval Salivary gland17 14 of 4 0.16Down
Larval midgut16 10 of 4 0.15Down
Larval tubule15 14 of 4 0.10Down
Larval hindgut34 34 of 4 0.31Down
Larval fat body37 24 of 4 0.30Down
Larval trachea98 64 of 4 0.90None
Larval carcass60 54 of 4 0.55Down
S2 cells (growing)116 24 of 4 1.05None
Whole fly110 74 of 4

Looking for FBgn0013753. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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