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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013755 through 18771 annotations produced 1 hits



Brother /// RhoGAP1A (Bro /// RhoGAP1A):

Annotation Number : CG7960
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013755
Gbrowse : chr3L:1647868-1648613 (+) // 100.0 //
Probeset : 1630889_at
Accessions : protein= NP_477066;, nucleotide= NM_057718;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator act
FlyMine data for FBgn0013755.
Homophila reports that CG7960 is a close match (4e-38) to human gene CBFB (NP_074036), a gene associated with Myeloid leukemia, acute, M4Eo subtype (3).
BioGrid reports that CG7960 interacts with CG1689 CG7959 .
TRiP has 1 RNAi stocks for FBgn0013755 available for purchase.
VDRC has 1 RNAi stocks for FBgn0013755 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 1.00None
Head1 00 of 4 2.20None
Eye0 00 of 4 1.33None
Thoracicoabdominal ganglion2 00 of 4 4.00None
Salivary gland5 30 of 410.38None
Crop1 00 of 4 2.30None
Midgut1 00 of 4 2.10None
Tubule0 00 of 4 1.80Up
Hindgut0 00 of 4 1.30None
Heart0 00 of 4 1.52None
Fat body0 00 of 4 1.33None
Ovary0 00 of 4 1.00None
Testis5 10 of 4 9.90None
Male accessory glands1 00 of 4 2.50None
Virgin spermatheca0 00 of 4 1.10None
Mated spermatheca0 00 of 4 1.00None
Adult carcass2 10 of 4 5.00None
Larval CNS5 20 of 4 9.62Up
Larval Salivary gland1 00 of 4 2.19None
Larval midgut1 00 of 4 2.67Up
Larval tubule0 00 of 4 1.60None
Larval hindgut0 00 of 4 0.90None
Larval fat body1 00 of 4 3.00Up
Larval trachea1 10 of 4 3.76None
Larval carcass1 00 of 4 2.67None
S2 cells (growing)0 00 of 4 1.62None
Whole fly0 00 of 4

Looking for FBgn0013755. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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