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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013756 through 18771 annotations produced 1 hits



Megator (Mtor):

Annotation Number : CG8274
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013756
Gbrowse : chr2R:7740123-7748364 (+) // 100.0 //
Probeset : 1639208_at
Accessions : protein= NP_477067;, nucleotide= NM_057719;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 /
FlyMine data for FBgn0013756.
TRiP has 1 RNAi stocks for FBgn0013756 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013756 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain122 ± 44 of 4 0.70Down
Head83 ± 44 of 4 0.50Down
Eye89 ± 44 of 4 0.53Down
Thoracicoabdominal ganglion110 ± 34 of 4 0.70Down
Salivary gland123 ± 44 of 4 0.73Down
Crop111 ± 54 of 4 0.70Down
Midgut146 ± 44 of 4 0.90None
Tubule128 ± 24 of 4 0.80Down
Hindgut110 ± 44 of 4 0.70Down
Heart66 ± 24 of 4 0.39Down
Fat body76 ± 84 of 4 0.45Down
Ovary394 ± 94 of 4 2.30Up
Testis85 ± 14 of 4 0.50Down
Male accessory glands211 ± 94 of 4 1.20Up
Virgin spermatheca91 ± 54 of 4 0.54Down
Mated spermatheca104 ± 54 of 4 0.62Down
Adult carcass61 ± 44 of 4 0.40Down
Larval CNS434 ± 324 of 4 2.57Up
Larval Salivary gland275 ± 54 of 4 1.63Up
Larval midgut154 ± 04 of 4 0.91None
Larval tubule176 ± 54 of 4 1.00None
Larval hindgut178 ± 54 of 4 1.06None
Larval fat body141 ± 74 of 4 0.80None
Larval trachea230 ± 174 of 4 1.37Up
Larval carcass185 ± 74 of 4 1.09None
S2 cells (growing)296 ± 104 of 4 1.75Up
Whole fly169 ± 124 of 4

Looking for FBgn0013756. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime