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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013759 through 18771 annotations produced 1 hits



Camguk (CASK):

Annotation Number : CG6703
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013759
Gbrowse : chr3R:17611466-17648364 (-) // 100.0 //
Probeset : 1628985_a_at
Accessions : protein= NP_001097862; /// NP_001097863; /// NP_001163681; /// NP_524441; /// NP_732661; /// NP_732662;, nucleotide= NM_001104392; /// NM_001104393; /// NM_001170210; /// NM_079717; /// NM_169970; /// NM_169971;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005954 // calcium- and calmodulin-dependent prote
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004385 // guanylate kinase activity // inferre
FlyMine data for FBgn0013759.
BDGP gene expression has embryonic in situ data for Caki: 20 pix of staining in 17 body parts.
Homophila reports that CG6703 is a close match (5e-12) to human gene (NP_109587), a gene associated with .
TRiP has 3 RNAi stocks for FBgn0013759 available for purchase.
VDRC has 3 RNAi stocks for FBgn0013759 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1274 304 of 4 7.70Up
Head300 174 of 4 1.80Up
Eye547 484 of 4 3.31Up
Thoracicoabdominal ganglion1237 254 of 4 7.50Up
Salivary gland242 164 of 4 1.47Up
Crop244 44 of 4 1.50Up
Midgut152 54 of 4 0.90None
Tubule169 54 of 4 1.00None
Hindgut260 104 of 4 1.60Up
Heart141 64 of 4 0.86None
Fat body69 94 of 4 0.42Down
Ovary326 94 of 4 2.00Up
Testis22 24 of 4 0.10Down
Male accessory glands128 24 of 4 0.80None
Virgin spermatheca302 134 of 4 1.83Up
Mated spermatheca288 154 of 4 1.74Up
Adult carcass83 34 of 4 0.50Down
Larval CNS581 364 of 4 3.52Up
Larval Salivary gland107 94 of 4 0.65Down
Larval midgut180 94 of 4 1.09None
Larval tubule201 44 of 4 1.20None
Larval hindgut213 34 of 4 1.29None
Larval fat body89 64 of 4 0.50Down
Larval trachea200 154 of 4 1.22None
Larval carcass142 34 of 4 0.86None
S2 cells (growing)219 54 of 4 1.33Up
Whole fly165 174 of 4

Looking for FBgn0013759. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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