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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013810 through 18771 annotations produced 1 hits



dynein-related heavy chain polypeptide (Dhc36C):

Annotation Number : CG5526
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013810
Gbrowse : chr2L:17501466-17525517 (+) // 100.0 //
Probeset : 1637975_at
Accessions : protein= NP_523591;, nucleotide= NM_078867;
Pathway : 0005858 // axonemal dynein complex // inferred from sequence or structural similarity /// 0005875 // microtubule associa
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0013810.
Homophila reports that CG5526 is a close match (0) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 2 RNAi stocks for FBgn0013810 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 01 of 4 0.30Down
Head10 ± 12 of 4 0.40Down
Eye4 ± 10 of 4 0.14Down
Thoracicoabdominal ganglion13 ± 12 of 4 0.40Down
Salivary gland16 ± 50 of 4 0.55None
Crop11 ± 22 of 4 0.40Down
Midgut8 ± 10 of 4 0.30Down
Tubule7 ± 00 of 4 0.20Down
Hindgut9 ± 11 of 4 0.30Down
Heart4 ± 11 of 4 0.14Down
Fat body9 ± 00 of 4 0.32Down
Ovary17 ± 24 of 4 0.60Down
Testis288 ± 84 of 4 9.50Up
Male accessory glands5 ± 10 of 4 0.20Down
Virgin spermatheca7 ± 10 of 4 0.23Down
Mated spermatheca4 ± 21 of 4 0.16Down
Adult carcass17 ± 31 of 4 0.60Down
Larval CNS11 ± 24 of 4 0.39Down
Larval Salivary gland5 ± 21 of 4 0.19Down
Larval midgut12 ± 41 of 4 0.40Down
Larval tubule5 ± 10 of 4 0.20Down
Larval hindgut8 ± 02 of 4 0.28Down
Larval fat body37 ± 112 of 4 1.20None
Larval trachea5 ± 31 of 4 0.19Down
Larval carcass8 ± 10 of 4 0.29Down
S2 cells (growing)20 ± 14 of 4 0.69Down
Whole fly30 ± 24 of 4

Looking for FBgn0013810. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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