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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013811 through 18771 annotations produced 1 hits



dynein-related heavy chain polypeptide (Dhc62B):

Annotation Number : CG15804
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013811
Gbrowse : chr3L:1759171-1771650 (-) // 100.0 //
Probeset : 1637896_at
Accessions : protein= NP_477085; /// NP_995958;, nucleotide= NM_057737; /// NM_206236;
Pathway : 0005858 // axonemal dynein complex // inferred from sequence or structural similarity /// 0005875 // microtubule associa
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0013811.
Homophila reports that CG15804 is a close match (0) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 5 RNAi stocks for FBgn0013811 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.40Down
Head12 ± 11 of 4 1.10None
Eye6 ± 10 of 4 0.52Down
Thoracicoabdominal ganglion7 ± 20 of 4 0.60None
Salivary gland34 ± 100 of 4 2.93None
Crop7 ± 20 of 4 0.70None
Midgut10 ± 30 of 4 0.90None
Tubule15 ± 00 of 4 1.30Up
Hindgut15 ± 10 of 4 1.30None
Heart6 ± 11 of 4 0.51Down
Fat body24 ± 63 of 4 2.07Up
Ovary5 ± 10 of 4 0.40Down
Testis98 ± 44 of 4 8.40Up
Male accessory glands17 ± 30 of 4 1.50None
Virgin spermatheca9 ± 20 of 4 0.79None
Mated spermatheca8 ± 20 of 4 0.70None
Adult carcass5 ± 00 of 4 0.40Down
Larval CNS15 ± 33 of 4 1.31None
Larval Salivary gland19 ± 43 of 4 1.66None
Larval midgut9 ± 30 of 4 0.83None
Larval tubule26 ± 41 of 4 2.20None
Larval hindgut9 ± 10 of 4 0.82None
Larval fat body36 ± 40 of 4 3.10Up
Larval trachea9 ± 21 of 4 0.84None
Larval carcass17 ± 00 of 4 1.45Up
S2 cells (growing)19 ± 21 of 4 1.64None
Whole fly11 ± 11 of 4

Looking for FBgn0013811. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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