Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013973 through 18771 annotations produced 1 hits



chr3R:26960190-26997242 (+) // 100.0 // (Guanylyl cyclase beta-subunit at 100B):

Annotation Number : CG1470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635419_at
Accessions : protein= , nucleotide= NP_524603;
Pathway : 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0006182 // cGMP biosynthetic process //
Interpro : "0008074 // guanylate cyclase complex
FlyMine data for full length.
Homophila reports that CG1470 is a close match (6e-43) to human gene CORD6;GUC2D;GUCY2D;LCA1 (NP_000171), a gene associated with Cone-rod dystrophy 6, 601777(3);Leber congenital amaurosis I, 204000 (3).
BioGrid reports that CG1470 interacts with CG31111 CG17107 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain145 ± 44 of 422.60Up
Head27 ± 54 of 4 4.20Up
Eye13 ± 13 of 4 2.16Up
Thoracicoabdominal ganglion64 ± 104 of 410.00Up
Salivary gland10 ± 40 of 4 1.57None
Crop3 ± 10 of 4 0.50None
Midgut5 ± 20 of 4 0.80None
Tubule1 ± 00 of 4 0.30Down
Hindgut1 ± 00 of 4 0.20None
Heart3 ± 00 of 4 0.50None
Fat body3 ± 30 of 4 0.52None
Ovary2 ± 10 of 4 0.40None
Testis5 ± 10 of 4 0.80None
Male accessory glands2 ± 00 of 4 0.40None
Virgin spermatheca1 ± 00 of 4 0.22None
Mated spermatheca4 ± 10 of 4 0.64None
Adult carcass3 ± 10 of 4 0.50None
Larval CNS26 ± 63 of 4 4.13Up
Larval Salivary gland3 ± 10 of 4 0.52None
Larval midgut1 ± 00 of 4 0.29None
Larval tubule3 ± 10 of 4 0.50None
Larval hindgut3 ± 10 of 4 0.48None
Larval fat body7 ± 20 of 4 1.20None
Larval trachea1 ± 10 of 4 0.26None
Larval carcass3 ± 10 of 4 0.59None
S2 cells (growing)2 ± 00 of 4 0.44None
Whole fly6 ± 20 of 4

Looking for FBgn0013973. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime