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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013981 through 18771 annotations produced 2 hits



Histone H4 replacement (His4r):

Annotation Number : CG3379
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013981
Gbrowse : chr3R:10451460-10452337 (+) // 100.0 //
Probeset : 1627419_at
Accessions : protein= NP_001027284; /// NP_001027288; /// NP_001027293; /// NP_001027297; /// NP_001027302; /// NP_001027307; /// NP_001027312; /// NP_001027317; /// NP_001027322; /// NP_001027327; /// NP_001027332; /// NP_001027337; /// NP_001027342; /// NP_001027347; /// NP_001027367; /// NP_001027372; /// NP_001027377; /// NP_524352; /// NP_724344; /// NP_731927; /// NP_731928;, nucleotide= NM_001032113; /// NM_001032117; /// NM_001032122; /// NM_001032126; /// NM_001032131; /// NM_001032136; /// NM_001032141; /// NM_001032146; /// NM_001032151; /// NM_001032156; /// NM_001032161; /// NM_001032166; /// NM_001032171; /// NM_001032176; /// NM_001032196; /// NM_001032201; /// NM_001032206; /// NM_079628; /// NM_165383; /// NM_169592; /// NM_169593;
Pathway : 0000786 // nucleosome // non-traceable author statement /// 0000786 // nucleosome // inferred from sequence or structura
Interpro : 0003677 // DNA binding // non-traceable author statement /// 0003677 // DNA binding // inferred from sequence or structu
FlyMine data for FBgn0013981.
BioGrid reports that CG3379 interacts with CG5215 .
TRiP has 1 RNAi stocks for FBgn0013981 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain712 ± 144 of 4 1.50Up
Head822 ± 434 of 4 1.80Up
Eye593 ± 344 of 4 1.29Up
Thoracicoabdominal ganglion352 ± 74 of 4 0.80None
Salivary gland1461 ± 384 of 4 3.18Up
Crop608 ± 184 of 4 1.30Up
Midgut425 ± 124 of 4 0.90None
Tubule74 ± 34 of 4 0.20Down
Hindgut840 ± 124 of 4 1.80Up
Heart300 ± 144 of 4 0.65Down
Fat body412 ± 814 of 4 0.90None
Ovary483 ± 104 of 4 1.10None
Testis91 ± 34 of 4 0.20Down
Male accessory glands602 ± 194 of 4 1.30Up
Virgin spermatheca25 ± 14 of 4 0.06Down
Mated spermatheca30 ± 34 of 4 0.07Down
Adult carcass344 ± 254 of 4 0.70Down
Larval CNS889 ± 734 of 4 1.93Up
Larval Salivary gland529 ± 514 of 4 1.15None
Larval midgut189 ± 54 of 4 0.41Down
Larval tubule710 ± 344 of 4 1.50Up
Larval hindgut564 ± 294 of 4 1.23None
Larval fat body355 ± 414 of 4 0.80None
Larval trachea606 ± 634 of 4 1.32Up
Larval carcass536 ± 514 of 4 1.17None
S2 cells (growing)631 ± 234 of 4 1.37Up
Whole fly459 ± 354 of 4



Histone H4 replacement (His4r):

Annotation Number : CG3379
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013981
Gbrowse : chr3R:10451460-10452337 (+) // 100.0 //
Probeset : 1627631_s_at
Accessions : protein= NP_001027284; /// NP_001027288; /// NP_001027293; /// NP_001027297; /// NP_001027302; /// NP_001027307; /// NP_001027312; /// NP_001027317; /// NP_001027322; /// NP_001027327; /// NP_001027332; /// NP_001027337; /// NP_001027342; /// NP_001027347; /// NP_001027367; /// NP_001027372; /// NP_001027377; /// NP_524352; /// NP_724344; /// NP_731927; /// NP_731928;, nucleotide= NM_001032113; /// NM_001032117; /// NM_001032122; /// NM_001032126; /// NM_001032131; /// NM_001032136; /// NM_001032141; /// NM_001032146; /// NM_001032151; /// NM_001032156; /// NM_001032161; /// NM_001032166; /// NM_001032171; /// NM_001032176; /// NM_001032196; /// NM_001032201; /// NM_001032206; /// NM_079628; /// NM_165383; /// NM_169592; /// NM_169593;
Pathway : 0000786 // nucleosome // non-traceable author statement /// 0000786 // nucleosome // inferred from sequence or structura
Interpro : 0003677 // DNA binding // non-traceable author statement /// 0003677 // DNA binding // inferred from sequence or structu
FlyMine data for FBgn0013981.
BioGrid reports that CG3379 interacts with CG5215 .
TRiP has 1 RNAi stocks for FBgn0013981 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3055 ± 514 of 4 1.20Up
Head3595 ± 934 of 4 1.40Up
Eye5747 ± 724 of 4 2.20Up
Thoracicoabdominal ganglion3666 ± 1154 of 4 1.40Up
Salivary gland11445 ± 5184 of 4 4.38Up
Crop4382 ± 1564 of 4 1.70Up
Midgut3765 ± 744 of 4 1.40Up
Tubule5082 ± 1494 of 4 1.90Up
Hindgut4130 ± 464 of 4 1.60Up
Heart4388 ± 2984 of 4 1.68Up
Fat body3423 ± 2894 of 4 1.31Up
Ovary2239 ± 294 of 4 0.90Down
Testis1116 ± 134 of 4 0.40Down
Male accessory glands6189 ± 1254 of 4 2.40Up
Virgin spermatheca4678 ± 1184 of 4 1.79Up
Mated spermatheca4770 ± 784 of 4 1.83Up
Adult carcass3641 ± 994 of 4 1.40Up
Larval CNS2667 ± 1684 of 4 1.02None
Larval Salivary gland5251 ± 2424 of 4 2.01Up
Larval midgut3231 ± 1304 of 4 1.24Up
Larval tubule4522 ± 434 of 4 1.70Up
Larval hindgut3707 ± 584 of 4 1.42Up
Larval fat body3440 ± 3184 of 4 1.30None
Larval trachea4674 ± 2374 of 4 1.79Up
Larval carcass3249 ± 1044 of 4 1.24Up
S2 cells (growing)3813 ± 514 of 4 1.46Up
Whole fly2612 ± 254 of 4

Looking for FBgn0013981. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime