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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013983 through 18771 annotations produced 1 hits



Immunodeficiency (imd):

Annotation Number : CG5576
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013983
Gbrowse : chr2R:14297295-14301077 (-) // 100.0 //
Probeset : 1637332_at
Accessions : protein= NP_573394;, nucleotide= NM_133166;
Pathway : 0005622 // intracellular // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0013983.
BDGP gene expression has embryonic in situ data for imd: 4 pix of staining in 1 body parts.
BioGrid reports that CG5576 interacts with CG7111 CG7725 CG8569 CG8882 CG9392 CG6447 CG6478 .
TRiP has 1 RNAi stocks for FBgn0013983 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013983 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 34 of 4 0.90None
Head56 14 of 4 1.70Up
Eye44 34 of 4 1.32None
Thoracicoabdominal ganglion29 24 of 4 0.90None
Salivary gland46 34 of 4 1.38Up
Crop56 44 of 4 1.70Up
Midgut54 14 of 4 1.60Up
Tubule20 11 of 4 0.60Down
Hindgut45 24 of 4 1.40Up
Heart63 54 of 4 1.87Up
Fat body71 44 of 4 2.10Up
Ovary43 24 of 4 1.30Up
Testis36 24 of 4 1.10None
Male accessory glands40 24 of 4 1.20None
Virgin spermatheca98 74 of 4 2.91Up
Mated spermatheca77 34 of 4 2.30Up
Adult carcass49 14 of 4 1.50Up
Larval CNS27 34 of 4 0.81Down
Larval Salivary gland54 32 of 4 1.62Up
Larval midgut24 10 of 4 0.74Down
Larval tubule81 44 of 4 2.40Up
Larval hindgut40 34 of 4 1.20None
Larval fat body78 124 of 4 2.30Up
Larval trachea52 94 of 4 1.57Up
Larval carcass42 44 of 4 1.27None
S2 cells (growing)61 24 of 4 1.83Up
Whole fly33 24 of 4

Looking for FBgn0013983. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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