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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0013984 through 18771 annotations produced 1 hits



insulin receptor (InR):

Annotation Number : CG18402
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013984
Gbrowse : chr3R:17398220-17406251 (-) // 100.0 //
Probeset : 1629141_at
Accessions : protein= NP_001138093; /// NP_001138094; /// NP_001138095; /// NP_524436;, nucleotide= NM_001144621; /// NM_001144622; /// NM_001144623; /// NM_079712;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0013984.
Homophila reports that CG18402 is a close match (4e-13) to human gene IPD1;IRAK4;REN64 (NP_057207), a gene associated with Invasive pneumococcal disease, recurrent isolated, 1, 610799 (3);IRAK4 deficiency, 607676 (3).
BioGrid reports that CG18402 interacts with CG9375 CG18085 CG8167 CG1210 CG1210 CG5671 CG5671 CG5671 CG6147 CG6147 CG5686 CG6975 CG3727 CG18402 .
TRiP has 3 RNAi stocks for FBgn0013984 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013984 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain101 ± 54 of 4 2.40Up
Head45 ± 44 of 4 1.10None
Eye88 ± 94 of 4 2.10Up
Thoracicoabdominal ganglion107 ± 44 of 4 2.50Up
Salivary gland57 ± 174 of 4 1.36None
Crop83 ± 44 of 4 2.00Up
Midgut58 ± 24 of 4 1.40Up
Tubule46 ± 24 of 4 1.10None
Hindgut74 ± 74 of 4 1.80Up
Heart91 ± 194 of 4 2.18None
Fat body162 ± 154 of 4 3.85Up
Ovary101 ± 34 of 4 2.40Up
Testis24 ± 14 of 4 0.60Down
Male accessory glands42 ± 14 of 4 1.00None
Virgin spermatheca80 ± 44 of 4 1.89Up
Mated spermatheca82 ± 94 of 4 1.96Up
Adult carcass62 ± 124 of 4 1.50None
Larval CNS203 ± 314 of 4 4.82Up
Larval Salivary gland63 ± 84 of 4 1.51None
Larval midgut54 ± 104 of 4 1.29None
Larval tubule83 ± 54 of 4 2.00Up
Larval hindgut64 ± 44 of 4 1.52Up
Larval fat body72 ± 64 of 4 1.70Up
Larval trachea73 ± 134 of 4 1.74Up
Larval carcass72 ± 44 of 4 1.72Up
S2 cells (growing)285 ± 34 of 4 6.75Up
Whole fly42 ± 24 of 4

Looking for FBgn0013984. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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