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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014010 through 18771 annotations produced 1 hits



Rab-protein 5 (Rab5):

Annotation Number : CG3664
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014010
Gbrowse : chr2L:2359545-2365362 (-) // 100.0 //
Probeset : 1634895_s_at
Accessions : protein= NP_523457; /// NP_722795; /// NP_722796; /// NP_722797; /// NP_722798; /// NP_722799;, nucleotide= NM_078733; /// NM_164475; /// NM_164476; /// NM_164477; /// NM_164478; /// NM_164479;
Pathway : 0005769 // early endosome // inferred from direct assay /// 0005769 // early endosome // non-traceable author statement
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0014010.
BDGP gene expression has embryonic in situ data for Rab5: 21 pix of staining in 16 body parts.
Homophila reports that CG3664 is a close match (1e-13) to human gene HRAS (NP_789765), a gene associated with Costello syndrome, 218040 (3);{Bladder cancer, somatic}, 109800 (3);{Thyroid carcinoma, follicular, somatic}, 188470 (3).
TRiP has 2 RNAi stocks for FBgn0014010 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014010 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain803 134 of 4 1.80Up
Head901 524 of 4 2.00Up
Eye2154 394 of 4 4.76Up
Thoracicoabdominal ganglion984 454 of 4 2.20Up
Salivary gland738 264 of 4 1.63Up
Crop1165 324 of 4 2.60Up
Midgut645 144 of 4 1.40Up
Tubule1008 464 of 4 2.20Up
Hindgut982 94 of 4 2.20Up
Heart1247 434 of 4 2.75Up
Fat body622 1074 of 4 1.37Up
Ovary380 24 of 4 0.80Down
Testis194 84 of 4 0.40Down
Male accessory glands729 434 of 4 1.60Up
Virgin spermatheca1105 174 of 4 2.44Up
Mated spermatheca1191 614 of 4 2.63Up
Adult carcass732 254 of 4 1.60Up
Larval CNS563 464 of 4 1.24Up
Larval Salivary gland514 254 of 4 1.14None
Larval midgut743 624 of 4 1.64Up
Larval tubule1895 334 of 4 4.20Up
Larval hindgut903 204 of 4 2.00Up
Larval fat body833 444 of 4 1.80Up
Larval trachea739 624 of 4 1.63Up
Larval carcass443 334 of 4 0.98None
S2 cells (growing)764 224 of 4 1.69Up
Whole fly452 144 of 4

Looking for FBgn0014010. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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