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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014011 through 18771 annotations produced 1 hits



Rac2 (Rac2):

Annotation Number : CG8556
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014011
Gbrowse : chr3L:7426988-7428279 (-) // 100.0 //
Probeset : 1624321_at
Accessions : protein= NP_648121;, nucleotide= NM_139864;
Pathway : engulfment // inferred from mutant phenotype /// 0007254 // JNK cascade // inferred from mutant phenotype /// 0007264 /
Interpro : elongation of leading edge cells // inferred from mutant phenotype /// 0007424 // open tracheal system development // i
FlyMine data for FBgn0014011.
BDGP gene expression has embryonic in situ data for Rac2: 36 pix of staining in 12 body parts.
Homophila reports that CG8556 is a close match (2e-11) to human gene HRAS (NP_789765), a gene associated with Costello syndrome, 218040 (3);{Bladder cancer, somatic}, 109800 (3);{Thyroid carcinoma, follicular, somatic}, 188470 (3).
BioGrid reports that CG8556 interacts with CG3938 CG5588 CG5588 CG10379 CG18214 .
VDRC has 3 RNAi stocks for FBgn0014011 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 ± 54 of 4 0.60Down
Head111 ± 54 of 4 0.80None
Eye201 ± 54 of 4 1.37Up
Thoracicoabdominal ganglion135 ± 74 of 4 0.90None
Salivary gland132 ± 353 of 4 0.90None
Crop659 ± 294 of 4 4.50Up
Midgut462 ± 154 of 4 3.20Up
Tubule177 ± 194 of 4 1.20None
Hindgut408 ± 94 of 4 2.80Up
Heart614 ± 404 of 4 4.19Up
Fat body215 ± 334 of 4 1.47Up
Ovary132 ± 84 of 4 0.90None
Testis30 ± 44 of 4 0.20Down
Male accessory glands96 ± 84 of 4 0.70Down
Virgin spermatheca185 ± 104 of 4 1.26None
Mated spermatheca201 ± 54 of 4 1.37Up
Adult carcass175 ± 324 of 4 1.20None
Larval CNS138 ± 294 of 4 0.95None
Larval Salivary gland157 ± 124 of 4 1.07None
Larval midgut574 ± 1004 of 4 3.91Up
Larval tubule117 ± 34 of 4 0.80None
Larval hindgut450 ± 764 of 4 3.07Up
Larval fat body124 ± 134 of 4 0.80None
Larval trachea335 ± 254 of 4 2.29Up
Larval carcass159 ± 174 of 4 1.09None
S2 cells (growing)437 ± 204 of 4 2.98Up
Whole fly146 ± 164 of 4

Looking for FBgn0014011. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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