FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0014023 through 18771 annotations produced 2 hits

Rlc1 (Rlc1):

Annotation Number : CG9378
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014023
Gbrowse : chr3R:5340711-5341829 (-) // 100.0 //
Probeset : 1639279_a_at
Accessions : protein= NP_477100; /// NP_788610;, nucleotide= NM_057752; /// NM_176433;
Pathway : 0005761 // mitochondrial ribosome // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal su
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0014023.
VDRC has 1 RNAi stocks for FBgn0014023 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	232 ± 5	4 of 4	1.40	Up
Head	155 ± 4	4 of 4	0.90	None
Eye	130 ± 4	4 of 4	0.77	Down
Thoracicoabdominal ganglion	246 ± 9	4 of 4	1.40	Up
Salivary gland	101 ± 5	4 of 4	0.60	Down
Crop	167 ± 5	4 of 4	1.00	None
Midgut	141 ± 8	4 of 4	0.80	None
Tubule	156 ± 4	4 of 4	0.90	Down
Hindgut	201 ± 6	4 of 4	1.20	Up
Heart	151 ± 4	4 of 4	0.89	None
Fat body	164 ± 25	4 of 4	0.97	None
Ovary	287 ± 6	4 of 4	1.70	Up
Testis	77 ± 3	4 of 4	0.50	Down
Male accessory glands	129 ± 5	4 of 4	0.80	Down
Virgin spermatheca	90 ± 3	4 of 4	0.53	Down
Mated spermatheca	110 ± 5	4 of 4	0.65	Down
Adult carcass	120 ± 4	4 of 4	0.70	Down
Larval CNS	202 ± 6	4 of 4	1.19	Up
Larval Salivary gland	214 ± 11	4 of 4	1.26	Up
Larval midgut	84 ± 8	4 of 4	0.50	Down
Larval tubule	84 ± 2	4 of 4	0.50	Down
Larval hindgut	179 ± 15	4 of 4	1.06	None
Larval fat body	96 ± 8	4 of 4	0.60	Down
Larval trachea	194 ± 31	4 of 4	1.15	None
Larval carcass	126 ± 20	4 of 4	0.74	None
S2 cells (growing)	188 ± 5	4 of 4	1.11	None
Whole fly	169 ± 9	4 of 4

Rlc1 (Rlc1):

Annotation Number : CG9378
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014023
Gbrowse : chr3R:5340537-5341829 (-) // 100.0 //
Probeset : 1640527_at
Accessions : protein= NP_477100; /// NP_788610;, nucleotide= NM_057752; /// NM_176433;
Pathway : 0005761 // mitochondrial ribosome // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal su
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0014023.
VDRC has 1 RNAi stocks for FBgn0014023 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	450 ± 17	4 of 4	1.20	None
Head	332 ± 8	4 of 4	0.90	None
Eye	321 ± 16	4 of 4	0.83	None
Thoracicoabdominal ganglion	597 ± 42	4 of 4	1.50	Up
Salivary gland	325 ± 13	4 of 4	0.84	None
Crop	357 ± 13	4 of 4	0.90	None
Midgut	332 ± 12	4 of 4	0.90	None
Tubule	437 ± 4	4 of 4	1.10	Up
Hindgut	370 ± 10	4 of 4	1.00	None
Heart	342 ± 14	4 of 4	0.89	None
Fat body	413 ± 70	4 of 4	1.07	None
Ovary	589 ± 2	4 of 4	1.50	Up
Testis	146 ± 7	4 of 4	0.40	Down
Male accessory glands	311 ± 30	4 of 4	0.80	None
Virgin spermatheca	577 ± 17	4 of 4	1.50	Up
Mated spermatheca	650 ± 16	4 of 4	1.68	Up
Adult carcass	288 ± 9	4 of 4	0.70	Down
Larval CNS	378 ± 29	4 of 4	0.98	None
Larval Salivary gland	466 ± 22	4 of 4	1.21	None
Larval midgut	255 ± 11	4 of 4	0.66	Down
Larval tubule	208 ± 8	4 of 4	0.50	Down
Larval hindgut	485 ± 34	4 of 4	1.26	None
Larval fat body	248 ± 20	4 of 4	0.60	Down
Larval trachea	470 ± 69	4 of 4	1.22	None
Larval carcass	290 ± 28	4 of 4	0.75	None
S2 cells (growing)	322 ± 7	4 of 4	0.84	None
Whole fly	386 ± 26	4 of 4

Looking for FBgn0014023. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720