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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014024 through 18771 annotations produced 1 hits



RNA-binding protein 4F (Rnp4F):

Annotation Number : CG3312
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014024
Gbrowse : chrX:5212954-5216743 (-) // 100.0 //
Probeset : 1638803_at
Accessions : protein= NP_001096883; /// NP_001096884; /// NP_511047; /// NP_996353;, nucleotide= NM_001103413; /// NM_001103414; /// NM_078492; /// NM_206630;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0014024.
BDGP gene expression has embryonic in situ data for Rnp4F: 23 pix of staining in 16 body parts.
Homophila reports that CG3312 is a close match (1e-14) to human gene DSAP1;KIAA0156;P100;SART3;TIP110 (NP_055521), a gene associated with Porokeratosis, disseminated superficial actinic, 1, 175900 (3).
TRiP has 1 RNAi stocks for FBgn0014024 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014024 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain177 54 of 4 1.30Up
Head103 134 of 4 0.70None
Eye93 64 of 4 0.66Down
Thoracicoabdominal ganglion154 114 of 4 1.10None
Salivary gland111 104 of 4 0.79None
Crop144 74 of 4 1.00None
Midgut121 84 of 4 0.90None
Tubule123 54 of 4 0.90Down
Hindgut114 14 of 4 0.80Down
Heart68 14 of 4 0.48Down
Fat body118 74 of 4 0.84Down
Ovary324 34 of 4 2.30Up
Testis55 24 of 4 0.40Down
Male accessory glands108 84 of 4 0.80Down
Virgin spermatheca185 74 of 4 1.31Up
Mated spermatheca204 74 of 4 1.45Up
Adult carcass102 14 of 4 0.70Down
Larval CNS305 454 of 4 2.17Up
Larval Salivary gland134 84 of 4 0.96None
Larval midgut126 24 of 4 0.89Down
Larval tubule98 44 of 4 0.70Down
Larval hindgut125 24 of 4 0.89Down
Larval fat body80 54 of 4 0.60Down
Larval trachea104 124 of 4 0.74Down
Larval carcass110 44 of 4 0.79Down
S2 cells (growing)198 44 of 4 1.41Up
Whole fly141 44 of 4

Looking for FBgn0014024. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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