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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014026 through 18771 annotations produced 1 hits



Ribosomal protein L7A (RpL7A):

Annotation Number : CG3314
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014026
Gbrowse : chrX:6425046-6427318 (-) // 100.0 //
Probeset : 1639893_s_at
Accessions : protein= NP_511063; /// NP_727094;, nucleotide= NM_078508; /// NM_167073;
Pathway : 0005840 // ribosome // non-traceable author statement /// 0005840 // ribosome // inferred from electronic annotation ///
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0014026.
BioGrid reports that CG3314 interacts with CG3858 CG4167 CG5053 CG6240 CG8031 CG8232 CG9506 CG9610 .
VDRC has 2 RNAi stocks for FBgn0014026 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2259 ± 324 of 4 0.70Down
Head3435 ± 1334 of 4 1.10None
Eye5695 ± 2114 of 4 1.86Up
Thoracicoabdominal ganglion3294 ± 884 of 4 1.10None
Salivary gland8806 ± 1354 of 4 2.88Up
Crop5360 ± 2434 of 4 1.80Up
Midgut3975 ± 414 of 4 1.30Up
Tubule3910 ± 534 of 4 1.30Up
Hindgut4007 ± 1314 of 4 1.30Up
Heart4911 ± 3864 of 4 1.61Up
Fat body4691 ± 6584 of 4 1.53Up
Ovary2918 ± 424 of 4 1.00None
Testis554 ± 214 of 4 0.20Down
Male accessory glands7159 ± 3044 of 4 2.30Up
Virgin spermatheca4970 ± 2054 of 4 1.62Up
Mated spermatheca5022 ± 1364 of 4 1.64Up
Adult carcass4337 ± 2684 of 4 1.40Up
Larval CNS2555 ± 1744 of 4 0.84Down
Larval Salivary gland6158 ± 3184 of 4 2.01Up
Larval midgut3303 ± 764 of 4 1.08None
Larval tubule4113 ± 1014 of 4 1.30Up
Larval hindgut3728 ± 864 of 4 1.22Up
Larval fat body5670 ± 7864 of 4 1.90Up
Larval trachea5193 ± 2364 of 4 1.70Up
Larval carcass3264 ± 1614 of 4 1.07None
S2 cells (growing)4863 ± 664 of 4 1.59Up
Whole fly3059 ± 814 of 4

Looking for FBgn0014026. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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