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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014028 through 18771 annotations produced 1 hits



Succinate dehydrogenase Iron Protein (SdhB):

Annotation Number : CG3283
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014028
Gbrowse : chr2R:2695115-2696678 (+) // 100.0 //
Probeset : 1640632_at
Accessions : protein= NP_477101;, nucleotide= NM_057753;
Pathway : succinate to ubiquinone // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
FlyMine data for FBgn0014028.
BDGP gene expression has embryonic in situ data for SdhB: 14 pix of staining in 9 body parts.
Homophila reports that CG3283 is a close match (2e-113) to human gene PGL4;SDH1;SDHB;SDHIP (NP_002991), a gene associated with Paraganglioma and gastric stromal sarcoma, 606864 (3);Paraganglioma, familial chromaffin, 4, 115310 (3);Pheochromocytoma, 171300 (3).
BioGrid reports that CG3283 interacts with CG5134 CG5907 CG6934 CG8360 CG8506 CG9079 CG9238 CG9784 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1075 ± 274 of 4 0.90None
Head1236 ± 384 of 4 1.10None
Eye1129 ± 324 of 4 0.98None
Thoracicoabdominal ganglion1265 ± 254 of 4 1.10None
Salivary gland1369 ± 564 of 4 1.19None
Crop942 ± 194 of 4 0.80None
Midgut926 ± 194 of 4 0.80None
Tubule979 ± 454 of 4 0.90Down
Hindgut1586 ± 324 of 4 1.40Up
Heart1186 ± 204 of 4 1.03None
Fat body829 ± 774 of 4 0.72Down
Ovary395 ± 44 of 4 0.30Down
Testis80 ± 24 of 4 0.10Down
Male accessory glands462 ± 294 of 4 0.40Down
Virgin spermatheca728 ± 194 of 4 0.63Down
Mated spermatheca686 ± 454 of 4 0.60Down
Adult carcass3170 ± 1074 of 4 2.80Up
Larval CNS500 ± 384 of 4 0.44Down
Larval Salivary gland594 ± 184 of 4 0.52Down
Larval midgut1440 ± 484 of 4 1.25Up
Larval tubule765 ± 694 of 4 0.70Down
Larval hindgut1507 ± 334 of 4 1.31Up
Larval fat body272 ± 234 of 4 0.20Down
Larval trachea707 ± 694 of 4 0.62Down
Larval carcass1253 ± 884 of 4 1.09None
S2 cells (growing)816 ± 64 of 4 0.71Down
Whole fly1148 ± 814 of 4

Looking for FBgn0014028. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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