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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014029 through 18771 annotations produced 1 hits



septin (Sep-02):

Annotation Number : CG4173
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014029
Gbrowse : chr3R:16411843-16414085 (-) // 100.0 //
Probeset : 1626425_at
Accessions : protein= NP_524417;, nucleotide= NM_079693;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotatio
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable aut
FlyMine data for FBgn0014029.
Homophila reports that CG4173 is a close match (9e-64) to human gene MSF;MSF1;NAPB;SEPT9 (NP_006631), a gene associated with Amyotrophy, hereditary neuralgic, 162100 (3);Leukemia, acute myeloid, therapy-related (1);Ovarian carcinoma (1).
BioGrid reports that CG4173 interacts with CG9699 CG7347 .
TRiP has 1 RNAi stocks for FBgn0014029 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014029 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain449 ± 154 of 4 1.40Up
Head293 ± 114 of 4 0.90None
Eye296 ± 54 of 4 0.94None
Thoracicoabdominal ganglion642 ± 214 of 4 2.00Up
Salivary gland1117 ± 374 of 4 3.55Up
Crop526 ± 114 of 4 1.70Up
Midgut393 ± 74 of 4 1.20Up
Tubule447 ± 324 of 4 1.40Up
Hindgut343 ± 64 of 4 1.10None
Heart277 ± 34 of 4 0.88Down
Fat body143 ± 104 of 4 0.46Down
Ovary548 ± 74 of 4 1.70Up
Testis171 ± 84 of 4 0.50Down
Male accessory glands497 ± 74 of 4 1.60Up
Virgin spermatheca253 ± 64 of 4 0.81Down
Mated spermatheca288 ± 114 of 4 0.92None
Adult carcass181 ± 114 of 4 0.60Down
Larval CNS873 ± 264 of 4 2.77Up
Larval Salivary gland1767 ± 1064 of 4 5.61Up
Larval midgut467 ± 164 of 4 1.48Up
Larval tubule1098 ± 474 of 4 3.50Up
Larval hindgut733 ± 424 of 4 2.33Up
Larval fat body399 ± 334 of 4 1.30None
Larval trachea880 ± 884 of 4 2.79Up
Larval carcass485 ± 324 of 4 1.54Up
S2 cells (growing)1102 ± 94 of 4 3.50Up
Whole fly314 ± 94 of 4

Looking for FBgn0014029. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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