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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014031 through 18771 annotations produced 1 hits



serine pyruvate aminotransferase (Spat):

Annotation Number : CG3926
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014031
Gbrowse : chrX:6422980-6424759 (+) // 100.0 //
Probeset : 1637872_at
Accessions : protein= NP_511062;, nucleotide= NM_078507;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity /// 0005777 // peroxisome // inferred
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004760 // serine-pyruvate transaminase activit
FlyMine data for FBgn0014031.
Homophila reports that CG3926 is a close match (2e-91) to human gene AGXT;SPAT (NP_000021), a gene associated with Hyperoxaluria, primary, type 1, 259900 (3).
VDRC has 2 RNAi stocks for FBgn0014031 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 14 of 4 0.10Down
Head568 244 of 4 3.30Up
Eye296 684 of 4 1.72None
Thoracicoabdominal ganglion20 24 of 4 0.10Down
Salivary gland33 33 of 4 0.20Down
Crop27 22 of 4 0.20Down
Midgut3 10 of 4 0.00Down
Tubule1682 1604 of 4 9.70Up
Hindgut61 54 of 4 0.40Down
Heart913 1284 of 4 5.28Up
Fat body1557 1114 of 4 9.00Up
Ovary2 00 of 4 0.00Down
Testis7 10 of 4 0.00Down
Male accessory glands111 124 of 4 0.60None
Virgin spermatheca2840 964 of 416.41Up
Mated spermatheca2112 1324 of 412.21Up
Adult carcass913 324 of 4 5.30Up
Larval CNS9 23 of 4 0.05Down
Larval Salivary gland30 43 of 4 0.17Down
Larval midgut11 40 of 4 0.07Down
Larval tubule2567 1354 of 414.80Up
Larval hindgut42 74 of 4 0.25Down
Larval fat body1100 1714 of 4 6.40Up
Larval trachea25 62 of 4 0.15Down
Larval carcass17 22 of 4 0.10Down
S2 cells (growing)9 10 of 4 0.06Down
Whole fly173 254 of 4

Looking for FBgn0014031. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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