FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0014031 through 18771 annotations produced 1 hits

serine pyruvate aminotransferase (Spat):

Annotation Number : CG3926
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014031
Gbrowse : chrX:6422980-6424759 (+) // 100.0 //
Probeset : 1637872_at
Accessions : protein= NP_511062;, nucleotide= NM_078507;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity /// 0005777 // peroxisome // inferred
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004760 // serine-pyruvate transaminase activit
FlyMine data for FBgn0014031.
Homophila reports that CG3926 is a close match (2e-91) to human gene AGXT;SPAT (NP_000021), a gene associated with Hyperoxaluria, primary, type 1, 259900 (3).
VDRC has 2 RNAi stocks for FBgn0014031 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	16 ± 1	4 of 4	0.10	Down
Head	568 ± 24	4 of 4	3.30	Up
Eye	296 ± 68	4 of 4	1.72	None
Thoracicoabdominal ganglion	20 ± 2	4 of 4	0.10	Down
Salivary gland	33 ± 3	3 of 4	0.20	Down
Crop	27 ± 2	2 of 4	0.20	Down
Midgut	3 ± 1	0 of 4	0.00	Down
Tubule	1682 ± 160	4 of 4	9.70	Up
Hindgut	61 ± 5	4 of 4	0.40	Down
Heart	913 ± 128	4 of 4	5.28	Up
Fat body	1557 ± 111	4 of 4	9.00	Up
Ovary	2 ± 0	0 of 4	0.00	Down
Testis	7 ± 1	0 of 4	0.00	Down
Male accessory glands	111 ± 12	4 of 4	0.60	None
Virgin spermatheca	2840 ± 96	4 of 4	16.41	Up
Mated spermatheca	2112 ± 132	4 of 4	12.21	Up
Adult carcass	913 ± 32	4 of 4	5.30	Up
Larval CNS	9 ± 2	3 of 4	0.05	Down
Larval Salivary gland	30 ± 4	3 of 4	0.17	Down
Larval midgut	11 ± 4	0 of 4	0.07	Down
Larval tubule	2567 ± 135	4 of 4	14.80	Up
Larval hindgut	42 ± 7	4 of 4	0.25	Down
Larval fat body	1100 ± 171	4 of 4	6.40	Up
Larval trachea	25 ± 6	2 of 4	0.15	Down
Larval carcass	17 ± 2	2 of 4	0.10	Down
S2 cells (growing)	9 ± 1	0 of 4	0.06	Down
Whole fly	173 ± 25	4 of 4

Looking for FBgn0014031. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720