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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0014073 through 18771 annotations produced 1 hits

tyrosine kinase (Tie):

Annotation Number : CG7525
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014073
Gbrowse : chr3L:4510697-4524519 (-) // 100.0 //
Probeset : 1629129_at
Accessions : protein= NP_523928;, nucleotide= NM_079204;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0014073.
Homophila reports that CG7525 is a close match (6e-12) to human gene JAK3;JAKL (NP_000206), a gene associated with SCID, autosomal recessive, T-negative/B-positive type (3).
VDRC has 2 RNAi stocks for FBgn0014073 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 01 of 4 0.10Down
Head125 44 of 4 2.40Up
Eye230 84 of 4 4.37Up
Thoracicoabdominal ganglion14 11 of 4 0.30Down
Salivary gland891 604 of 416.89Up
Crop812 264 of 415.40Up
Midgut29 24 of 4 0.60Down
Tubule8 10 of 4 0.20Down
Hindgut314 74 of 4 6.00Up
Heart10 12 of 4 0.20Down
Fat body13 32 of 4 0.26Down
Ovary29 24 of 4 0.50Down
Testis77 54 of 4 1.50Up
Male accessory glands351 84 of 4 6.70Up
Virgin spermatheca118 104 of 4 2.24Up
Mated spermatheca115 114 of 4 2.18Up
Adult carcass87 74 of 4 1.60Up
Larval CNS11 32 of 4 0.21Down
Larval Salivary gland618 144 of 411.71Up
Larval midgut8 10 of 4 0.16Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut213 214 of 4 4.05Up
Larval fat body8 10 of 4 0.20Down
Larval trachea442 464 of 4 8.38Up
Larval carcass81 104 of 4 1.54None
S2 cells (growing)2 00 of 4 0.05Down
Whole fly52 44 of 4

Looking for FBgn0014073. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime