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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014076 through 18771 annotations produced 1 hits



Vitelline membrane 32E (Vm32E):

Annotation Number : CG16874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014076
Gbrowse : chr2L:11171228-11171665 (-) // 100.0 //
Probeset : 1624061_at
Accessions : protein= NP_477103;, nucleotide= NM_057755;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008316 // structural constituent of vitelline memb
FlyMine data for FBgn0014076.
BioGrid reports that CG16874 interacts with CG8922 CG3923 .
VDRC has 3 RNAi stocks for FBgn0014076 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 00 of 4 0.00None
Head1 00 of 4 0.00None
Eye2 10 of 4 0.00None
Thoracicoabdominal ganglion6 10 of 4 0.00None
Salivary gland11 40 of 4 0.02None
Crop4 10 of 4 0.00None
Midgut1 00 of 4 0.00None
Tubule6 20 of 4 0.00Down
Hindgut1 00 of 4 0.00None
Heart3 10 of 4 0.01None
Fat body5 60 of 4 0.01None
Ovary865 1674 of 4 1.40None
Testis1 00 of 4 0.00None
Male accessory glands2 00 of 4 0.00None
Virgin spermatheca10 40 of 4 0.02None
Mated spermatheca16 81 of 4 0.03None
Adult carcass42 311 of 4 0.10None
Larval CNS5 30 of 4 0.01None
Larval Salivary gland2 00 of 4 0.00None
Larval midgut6 20 of 4 0.01None
Larval tubule1 00 of 4 0.00None
Larval hindgut3 10 of 4 0.00None
Larval fat body3 10 of 4 0.00None
Larval trachea2 20 of 4 0.00None
Larval carcass1 00 of 4 0.00None
S2 cells (growing)1 00 of 4 0.00None
Whole fly603 2034 of 4

Looking for FBgn0014076. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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