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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014133 through 18771 annotations produced 1 hits



bifocal (bif):

Annotation Number : CG1822
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014133
Gbrowse : chrX:11573027-11588766 (+) // 100.0 //
Probeset : 1626637_a_at
Accessions : protein= NP_511128; /// NP_727547;, nucleotide= NM_078573; /// NM_167295;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0003779 // actin binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic ann
FlyMine data for FBgn0014133.
BDGP gene expression has embryonic in situ data for bif: 2 pix of staining in 1 body parts.
BioGrid reports that CG1822 interacts with CG6588 CG16973 CG8604 .
TRiP has 1 RNAi stocks for FBgn0014133 available for purchase.
VDRC has 1 RNAi stocks for FBgn0014133 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain218 84 of 4 1.10None
Head292 134 of 4 1.40Up
Eye812 394 of 4 3.92Up
Thoracicoabdominal ganglion203 64 of 4 1.00None
Salivary gland304 304 of 4 1.47Up
Crop165 114 of 4 0.80Down
Midgut600 144 of 4 2.90Up
Tubule507 444 of 4 2.40Up
Hindgut173 44 of 4 0.80None
Heart88 44 of 4 0.43Down
Fat body34 114 of 4 0.17Down
Ovary309 104 of 4 1.50Up
Testis118 54 of 4 0.60Down
Male accessory glands536 124 of 4 2.60Up
Virgin spermatheca44 34 of 4 0.22Down
Mated spermatheca48 44 of 4 0.23Down
Adult carcass77 74 of 4 0.40Down
Larval CNS487 404 of 4 2.35Up
Larval Salivary gland316 244 of 4 1.53Up
Larval midgut1011 344 of 4 4.88Up
Larval tubule524 124 of 4 2.50Up
Larval hindgut332 264 of 4 1.60Up
Larval fat body101 54 of 4 0.50Down
Larval trachea249 394 of 4 1.20None
Larval carcass150 124 of 4 0.73Down
S2 cells (growing)753 134 of 4 3.63Up
Whole fly207 124 of 4

Looking for FBgn0014133. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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