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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014141 through 18771 annotations produced 1 hits



filamin (cher):

Annotation Number : CG3937
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014141
Gbrowse : chr3R:12917256-12944804 (-) // 100.0 //
Probeset : 1632339_s_at
Accessions : protein= NP_001138067; /// NP_524383; /// NP_732207; /// NP_732208; /// NP_996224;, nucleotide= NM_001144595; /// NM_079659; /// NM_169746; /// NM_169747; /// NM_206502;
Pathway : actin assembly // inferred from mutant phenotype /// 0008340 // determination of adult lifespan // inferred from mutant
Interpro : 0035182 // female germline ring canal outer rim // inferred from direct assay /// 0035183 // female germline ring canal
FlyMine data for FBgn0014141.
Homophila reports that CG3937 is a close match (2e-20) to human gene BMD;CMD3B;DMD (NP_004000), a gene associated with Becker muscular dystrophy, 300376 (3);Cardiomyopathy, dilated, 3B, 302045 (3);Duchenne muscular dystrophy, 310200 (3).
BioGrid reports that CG3937 interacts with CG3988 CG5266 CG5446 CG5723 CG5838 CG6353 CG6416 CG6660 CG6776 CG7056 CG7181 CG8316 CG8357 CG8841 CG9027 CG9188 CG9784 CG18803 .
TRiP has 2 RNAi stocks for FBgn0014141 available for purchase.
VDRC has 1 RNAi stocks for FBgn0014141 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 24 of 4 0.10Down
Head99 154 of 4 0.50Down
Eye81 84 of 4 0.43Down
Thoracicoabdominal ganglion41 04 of 4 0.20Down
Salivary gland77 74 of 4 0.41Down
Crop170 84 of 4 0.90None
Midgut105 44 of 4 0.60Down
Tubule328 394 of 4 1.70Up
Hindgut313 104 of 4 1.70Up
Heart178 294 of 4 0.94None
Fat body116 154 of 4 0.62Down
Ovary143 44 of 4 0.80None
Testis31 34 of 4 0.20Down
Male accessory glands398 194 of 4 2.10Up
Virgin spermatheca92 74 of 4 0.49Down
Mated spermatheca144 114 of 4 0.76None
Adult carcass473 454 of 4 2.50Up
Larval CNS149 304 of 4 0.79None
Larval Salivary gland1188 454 of 4 6.28Up
Larval midgut206 64 of 4 1.09None
Larval tubule659 224 of 4 3.50Up
Larval hindgut678 294 of 4 3.59Up
Larval fat body71 54 of 4 0.40Down
Larval trachea828 184 of 4 4.38Up
Larval carcass2935 1054 of 415.51Up
S2 cells (growing)1025 274 of 4 5.42Up
Whole fly189 184 of 4

Looking for FBgn0014141. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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