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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014163 through 18771 annotations produced 1 hits



failed axon connections (fax):

Annotation Number : CG4609
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014163
Gbrowse : chr3L:16396884-16404939 (-) // 100.0 //
Probeset : 1624705_a_at
Accessions : protein= NP_001014586; /// NP_001014587; /// NP_524106; /// NP_788514;, nucleotide= NM_001014586; /// NM_001014587; /// NM_079382; /// NM_176336;
FlyMine data for FBgn0014163.
BioGrid reports that CG4609 interacts with CG6866 CG6934 CG4032 CG4032 CG18214 .
TRiP has 1 RNAi stocks for FBgn0014163 available for purchase.
VDRC has 2 RNAi stocks for FBgn0014163 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain570 384 of 4 1.60None
Head364 84 of 4 1.00None
Eye612 294 of 4 1.74Up
Thoracicoabdominal ganglion349 234 of 4 1.00None
Salivary gland66 34 of 4 0.19Down
Crop1060 814 of 4 3.00Up
Midgut68 34 of 4 0.20Down
Tubule24 34 of 4 0.10Down
Hindgut98 64 of 4 0.30Down
Heart460 204 of 4 1.31Up
Fat body101 134 of 4 0.29Down
Ovary571 74 of 4 1.60Up
Testis642 434 of 4 1.80Up
Male accessory glands108 64 of 4 0.30Down
Virgin spermatheca38 24 of 4 0.11Down
Mated spermatheca53 44 of 4 0.15Down
Adult carcass209 64 of 4 0.60Down
Larval CNS2094 1344 of 4 5.94Up
Larval Salivary gland16 30 of 4 0.05Down
Larval midgut158 344 of 4 0.45Down
Larval tubule92 144 of 4 0.30Down
Larval hindgut104 64 of 4 0.30Down
Larval fat body1460 1904 of 4 4.10Up
Larval trachea443 704 of 4 1.26None
Larval carcass300 434 of 4 0.85None
S2 cells (growing)885 274 of 4 2.51Up
Whole fly352 164 of 4

Looking for FBgn0014163. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime