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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0014184 through 18771 annotations produced 1 hits

Ornithine decarboxylase antizyme (Oda):

Annotation Number : CG16747
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014184
Gbrowse : chr2R:8054080-8061767 (-) // 99.77 //
Probeset : 1634757_a_at
Accessions : protein= NP_725103; /// NP_725104; /// NP_725105;, nucleotide= NM_165863; /// NM_165864; /// NM_165865;
Interpro : 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0014184.
BDGP gene expression has embryonic in situ data for guf: 4 pix of staining in 2 body parts.
BioGrid reports that CG16747 interacts with CG2227 CG4820 CG7386 CG17050 CG17273 CG18217 CG2125 CG2835 CG2944 CG30387 CG30389 CG31550 CG31917 CG32594 CG4617 CG4753 CG5546 CG5874 CG5928 CG6058 CG6407 CG6606 CG7001 CG7171 CG7546 CG7570 CG7974 CG7987 CG8319 CG8368 CG9072 CG9324 CG9471 Dmel CG18350 Dmel CG14425 Dmel CG34380 .
TRiP has 1 RNAi stocks for FBgn0014184 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2082 1204 of 4 1.10None
Head2456 1114 of 4 1.30Up
Eye3871 894 of 4 2.01Up
Thoracicoabdominal ganglion2756 484 of 4 1.40Up
Salivary gland5195 3314 of 4 2.70Up
Crop3159 1094 of 4 1.60Up
Midgut2956 1304 of 4 1.50Up
Tubule4261 1914 of 4 2.20Up
Hindgut2820 734 of 4 1.50Up
Heart2519 604 of 4 1.31Up
Fat body3217 1674 of 4 1.67Up
Ovary1519 264 of 4 0.80None
Testis518 294 of 4 0.30Down
Male accessory glands4216 814 of 4 2.20Up
Virgin spermatheca3735 1194 of 4 1.94Up
Mated spermatheca3431 1604 of 4 1.78Up
Adult carcass2997 664 of 4 1.60Up
Larval CNS2032 784 of 4 1.06None
Larval Salivary gland2554 2724 of 4 1.33None
Larval midgut4702 1124 of 4 2.44Up
Larval tubule3328 1574 of 4 1.70Up
Larval hindgut3403 724 of 4 1.77Up
Larval fat body2373 1584 of 4 1.20None
Larval trachea2130 2064 of 4 1.11None
Larval carcass2741 894 of 4 1.42Up
S2 cells (growing)838 184 of 4 0.44Down
Whole fly1924 1504 of 4

Looking for FBgn0014184. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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